Jobsub ID 303694.3@dunegpschedd01.fnal.gov
| Jobsub ID | 303694.3@dunegpschedd01.fnal.gov |
| Workflow ID | 12720 |
| Stage ID | 1 |
| User name | calcuttj@fnal.gov |
| Requested | Processors | 1 |
| GPU | No |
| RSS bytes | 2097152000 (2000 MiB) |
| Wall seconds limit | 80000 (22 hours) |
| Submitted time | 2026-02-04 00:18:27 |
| Site | CERN |
| Entry | CMSHTPC_T2_CH_CERN_ce509 |
| Last heartbeat | 2026-02-04 00:21:50 |
| From worker node | Hostname | b9p04p3844.cern.ch |
| cpuinfo | AMD EPYC 7543 32-Core Processor |
| OS release | Scientific Linux release 7.9 (Nitrogen) |
| Processors | 1 |
| RSS bytes | 2097152000 (2000 MiB) |
| Wall seconds limit | 343800 (95 hours) |
| GPU | |
| Inner Apptainer? | True |
| Job state | none_processed |
| Started | 2026-02-04 00:20:20 |
| Input files | vd-protodune:np02vd_raw_run040380_0007_df-s04-d0_dw_0_20251105T175934.hdf5
|
| Outputting started | 2026-02-04 00:21:29 |
| Output files | |
| Finished | 2026-02-04 00:21:50 |
| List job events Cached HTCondor job logs |
Jobscript log (last 10,000 characters)
Setting up larsoft UPS area... /cvmfs/larsoft.opensciencegrid.org
Setting up DUNE UPS area... /cvmfs/dune.opensciencegrid.org/products/dune/
Pip installing snakemake
WARNING: The script pulptest is installed in '/home/.local/bin' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
WARNING: The script tabulate is installed in '/home/.local/bin' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
WARNING: The script humanfriendly is installed in '/home/.local/bin' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
WARNING: The scripts docutils, rst2html, rst2html4, rst2html5, rst2latex, rst2man, rst2odt, rst2pseudoxml, rst2s5, rst2xetex and rst2xml are installed in '/home/.local/bin' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
WARNING: The script normalizer is installed in '/home/.local/bin' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
WARNING: The script yte is installed in '/home/.local/bin' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
WARNING: The scripts jupyter, jupyter-migrate and jupyter-troubleshoot are installed in '/home/.local/bin' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
WARNING: The script jsonschema is installed in '/home/.local/bin' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
WARNING: The script jupyter-trust is installed in '/home/.local/bin' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
WARNING: The scripts snakemake and snakemake-bash-completion are installed in '/home/.local/bin' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
[notice] A new release of pip is available: 23.0 -> 26.0
[notice] To update, run: pip install --upgrade pip
7.32.4
workflow/Snakefile
Building DAG of jobs...
Using shell: /usr/bin/bash
Provided cores: 1 (use --cores to define parallelism)
Rules claiming more threads will be scaled down.
Singularity containers: ignored
Job stats:
job count
----- -------
all 1
jgf 1
total 2
Select jobs to execute...
Calling justin get file -- 0
0
justin-get-file successful: vd-protodune:np02vd_raw_run040380_0007_df-s04-d0_dw_0_20251105T175934.hdf5 root://eospublic.cern.ch:1094//eos/experiment/neutplatform/protodune/dune/vd-protodune/12/2d/np02vd_raw_run040380_0007_df-s04-d0_dw_0_20251105T175934.hdf5 DUNE_CERN_EOS
Select jobs to execute...
input:
/usr/bin/bash: line 3: xrootd_posix_preload: unbound variable
[Wed Feb 4 01:21:28 2026]
Error in rule test:
jobid: 5
input: justin_input_pfns.txt
output: test.txt
shell:
echo "input:"
input_file=$(head -n 1 justin_input_pfns.txt)
LD_PRELOAD=$xrootd_posix_preload lardon -file $input_file -out lardon -trk
output_file=$(ls *lardon.h5 | head -n 1)
echo $output_file > test.txt
(one of the commands exited with non-zero exit code; note that snakemake uses bash strict mode!)
Shutting down, this might take some time.
Exiting because a job execution failed. Look above for error message
Complete log: .snakemake/log/2026-02-04T012127.525175.snakemake.log
Done running snakemake 