Workflow 10198, Stage 1

Workflow	10198
Priority	50
Processors	1
Wall seconds	80000
Image	/cvmfs/singularity.opensciencegrid.org/fermilab/fnal-wn-sl7:latest
RSS bytes	2096103424 (1999 MiB)
Max distance for inputs	100.0
Enabled input RSEs	CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, MONTECARLO, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled output RSEs	CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled sites	BR_CBPF, CA_SFU, CERN, CH_UNIBE-LHEP, CZ_FZU, ES_CIEMAT, ES_PIC, FR_CCIN2P3, IT_CNAF, NL_NIKHEF, NL_SURFsara, UK_Bristol, UK_Brunel, UK_Durham, UK_Edinburgh, UK_Lancaster, UK_Liverpool, UK_Manchester, UK_Oxford, UK_QMUL, UK_RAL-PPD, UK_RAL-Tier1, UK_Sheffield, US_Colorado, US_FNAL-FermiGrid, US_FNAL-T1, US_Michigan, US_PuertoRico, US_SU-ITS, US_Swan, US_UChicago, US_UConn-HPC, US_UCSD, US_Wisconsin
Scope	usertests
Events for this stage

Output patterns

	Destination	Pattern	Lifetime	For next stage	RSE expression
1	Rucio usertests:calcuttj_h2_merge_test-fnal-w10198s1p1	*root	604800	False

Environment variables

Name	Value
DATASET	usertests:calcuttj_h2_beam_test-fnal-w10171s1p1
do_counts	1
DUNESW_TAR	/cvmfs/fifeuser4.opensciencegrid.org/sw/dune/084a2623749448b13152b0d27491791c3902f9fc
DUNESW_VERSION	v10_10_02d00
extra_fcl_path	/cvmfs/fifeuser4.opensciencegrid.org/sw/dune/bdf1c2b4ca937343e48c97e48c8443e0e35aa6c9
fcl_file	run_eventcount_pdvd.fcl
LIMIT	100
MERGE_DIR	/cvmfs/fifeuser4.opensciencegrid.org/sw/dune/5a837a2f9ce0b916d8725ae4ed0b18872c84fe1f

File states

Total files	Finding	Unallocated	Allocated	Outputting	Processed	Not found	Failed
1	0	0	0	0	1	0	0

Job states

Total	Submitted	Started	Processing	Outputting	Finished	Notused	Aborted	Stalled	Jobscript error	Outputting failed	None processed
2	0	0	0	0	2	0	0	0	0	0	0

RSEs used

Name	Inputs	Outputs
MONTECARLO	1	0
RAL_ECHO	0	1

Stats of processed input files as CSV or JSON, and of uploaded output files as CSV or JSON (up to 10000 files included)

Jobscript

#!/bin/bash

source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh

if [ -z ${DATASET} ]; then
  echo "ERROR MUST SUPPLY DATASET"
  exit 1
fi

if [ -z ${MERGE_DIR} ]; then
  echo "ERROR MUST SUPPLY MERGE_DIR"
  exit 1
fi

if [ -z ${JUSTIN_PROCESSORS} ]; then
  JUSTIN_PROCESSORS=1
fi

echo "Justin processors: ${JUSTIN_PROCESSORS}"

export TF_NUM_THREADS=${JUSTIN_PROCESSORS}   
export OPENBLAS_NUM_THREADS=${JUSTIN_PROCESSORS} 
export JULIA_NUM_THREADS=${JUSTIN_PROCESSORS} 
export MKL_NUM_THREADS=${JUSTIN_PROCESSORS} 
export NUMEXPR_NUM_THREADS=${JUSTIN_PROCESSORS} 
export OMP_NUM_THREADS=${JUSTIN_PROCESSORS}

##Get the MC number from this to bookkeep for justin
DID_PFN_RSE=`$JUSTIN_PATH/justin-get-file`
pfn_exit=$?
if [ $pfn_exit -ne 0 ]; then
  echo "Error in justin-get-file. Exiting safely"
  exit 0
fi
echo "did_pfn_rse $DID_PFN_RSE"
pfn=`echo $DID_PFN_RSE | cut -f2 -d' '`


setup root v6_28_12 -q e26:p3915:prof
export METACAT_SERVER_URL=https://metacat.fnal.gov:9443/dune_meta_prod/app;
export METACAT_AUTH_SERVER_URL=https://metacat.fnal.gov:8143/auth/dune
setup metacat
setup rucio v35_4_0

LIMIT=${LIMIT:-100}

subrun=`echo $JUSTIN_JOBSUB_ID  | cut -f1 -d@ | cut -f2 -d.`
run=`echo $JUSTIN_JOBSUB_ID  | cut -f1 -d@ | cut -f1 -d.`

echo $subrun $run

python $MERGE_DIR/merge_g4bl.py merge \
  --dataset ${DATASET}  \
  -o inherit \
  --limit ${LIMIT} \
  --iter $(( 10#$pfn - 1 )) --run $run \
  --subrun $subrun 
  #--namespace ehn1-beam-np04

if [ $? -ne 0 ]
then
  echo "Exiting with error"
  exit 1
fi

if [ -n "${do_counts}" ]
then
  echo "Will do counting"

  if [ -n "${DUNESW_TAR}" ]
  then
    export PRODUCTS=${DUNESW_TAR}:${PRODUCTS}
  fi


  DUNESW_VERSION=${DUNESW_VERSION:-v10_13_00d00}
  setup dunesw $DUNESW_VERSION -q e26:prof

  setup_exit=$?
  if [ $setup_exit -ne 0 ]; then
    echo "Failed to setup dunesw $DUNESW_VERSION"
    exit $setup_exit
  fi
  if [ -n "$extra_fcl_path" ]; then
    export FHICL_FILE_PATH=${extra_fcl_path}:${FHICL_FILE_PATH}
    echo "Added ${extra_fcl_path} to fhicl file path"
    echo "${FHICL_FILE_PATH}"
  fi

 

  fcl_file=${fcl_file:-"run_eventcount.fcl"}
  outname=$(ls *root | head -n 1) #Risky: assuming one root file
  runEventCounter -c $fcl_file -i $outname -o "eventcount.txt" -n ${JUSTIN_PROCESSORS}
  count_exit=$?
  if [ $count_exit -ne 0 ]; then
    echo "Failed to run counts"
    exit $count_exit
  fi
 
  count=$(head -n 1 eventcount.txt | cut -d' ' -f2)
  echo "Count: $count"

  sed -i "/metadata/a\
    \"core.event_count\": ${count}," ${outname}.json
fi


echo "$pfn" > justin-processed-pfns.txt