Workflow 10801, Stage 1

Priority	50
Processors	4
Wall seconds	80000
Image	/cvmfs/singularity.opensciencegrid.org/fermilab/fnal-wn-sl7:latest
RSS bytes	6815744000 (6500 MiB)
Max distance for inputs	30.0
Enabled input RSEs	CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, MONTECARLO, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled output RSEs	CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled sites	BR_CBPF, CA_SFU, CA_Victoria, CERN, CH_UNIBE-LHEP, CZ_FZU, ES_CIEMAT, ES_PIC, FR_CCIN2P3, IT_CNAF, NL_NIKHEF, NL_SURFsara, UK_Bristol, UK_Brunel, UK_Durham, UK_Edinburgh, UK_Lancaster, UK_Liverpool, UK_Manchester, UK_Oxford, UK_QMUL, UK_RAL-PPD, UK_RAL-Tier1, UK_Sheffield, US_Colorado, US_FNAL-FermiGrid, US_FNAL-T1, US_Michigan, US_PuertoRico, US_SU-ITS, US_Swan, US_UChicago, US_UConn-HPC, US_UCSD, US_Wisconsin
Scope	usertests
Events for this stage

Output patterns

	Destination	Pattern	Lifetime	For next stage	RSE expression
1	https://fndcadoor.fnal.gov:2880/dune/scratch/users/ykermaid/fnal/10801/1	*singlehit.root

Environment variables

Name	Value
METADATA_DIR	/cvmfs/fifeuser1.opensciencegrid.org/sw/dune/71f643ddd59465043e3cd3712a1e24b9cd0fa631
NEVENTS	-1

Condor Class Ads

Name	Value
HAS_CVMFS_dune_osgstorage_org	true

File states

Total files	Finding	Unallocated	Allocated	Outputting	Processed	Not found	Failed
1000	0	40	0	0	938	0	22

Job states

Total	Submitted	Started	Processing	Outputting	Finished	Notused	Aborted	Stalled	Jobscript error	Outputting failed	None processed
1507	0	0	0	0	1209	0	34	110	150	4	0

RSEs used

Name	Inputs	Outputs
DUNE_US_FNAL_DISK_STAGE	1214	0
None	0	938

Stats of processed input files as CSV or JSON, and of uploaded output files as CSV or JSON (up to 10000 files included)

File reset events, by site

Site	Allocated	Outputting
CA_SFU	43	2
US_FNAL-FermiGrid	37	2
US_UChicago	25	0
US_UCSD	4	0
US_Wisconsin	2	0
CA_Victoria	1	0

Jobscript

#!/bin/bash
#

source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh
setup metacat
export METACAT_SERVER_URL=https://metacat.fnal.gov:9443/dune_meta_prod/app
export METACAT_AUTH_SERVER_URL=https://metacat.fnal.gov:8143/auth/dune

DUNE_TAG=v10_12_01d00
#Setup recent lar software suite
DUNE_VERSION=${DUNE_VERSION:-${DUNE_TAG}}
setup dunesw \
   "${DUNE_VERSION}" \
   -q "${DUNE_QUALIFIER:-e26:prof}"

if [ $? -ne 0 ]; then
  echo "Failed to setup dunesw $DUNE_VERSION $DUNE_QUALIFIER"
  exit 1
fi

if [ -n "${METADATA_DIR}" ]; then
  stat ${METADATA_DIR}
  if [ $? -ne 0 ]; then
    echo "failed to stat metadata dir"
  fi

  echo "metadata dir contents:"
  ls $METADATA_DIR
  PYTHONPATH=${METADATA_DIR}:$PYTHONPATH
fi

FCL1=${FCL1:-"runSingleHit_PDVD.fcl"}
echo "FCL1 dump:" ${FCL1}
fhicl-dump ${FCL1}
if [ $? -ne 0 ]; then
  echo "fhicl-dump ${FCL1} failed"
  exit 1
fi

echo "DUNESW loc:"
ups active | grep dunesw

if [ -z ${JUSTIN_PROCESSORS} ]; then
  JUSTIN_PROCESSORS=1
fi

echo "Justin processors: ${JUSTIN_PROCESSORS}"

export TF_NUM_THREADS=${JUSTIN_PROCESSORS}   
export OPENBLAS_NUM_THREADS=${JUSTIN_PROCESSORS} 
export JULIA_NUM_THREADS=${JUSTIN_PROCESSORS} 
export MKL_NUM_THREADS=${JUSTIN_PROCESSORS} 
export NUMEXPR_NUM_THREADS=${JUSTIN_PROCESSORS} 
export OMP_NUM_THREADS=${JUSTIN_PROCESSORS}  

echo "printing env"
env

echo "Will use justin-get-file"
#
DID_PFN_RSE=`$JUSTIN_PATH/justin-get-file`
##Check that any file was returned
if [ "${DID_PFN_RSE}" == "" ] ; then
  echo "Could not get file"
  exit 0
fi

pfn=`echo ${DID_PFN_RSE} | cut -f2 -d' '`
did=`echo ${DID_PFN_RSE} | cut -f1 -d' '`
echo "pfn: ${pfn}"
echo "did: ${did}"
now=$(date -u +"%Y%m%dT%H%M%SZ")

output_file=$(basename ${pfn%.*})_${now}_singlehit.root
echo "output_file: $output_file"

nevents=${NEVENTS:--1}

extra_line=""
if [ -n "${SKIPFCL2}" ]; then
  jobsub_id=`echo ${JUSTIN_JOBSUB_ID:-1.1@1} | cut -f1 -d'@' | sed -e"s/\./_/"`
fi

echo "Running reco stage1"
touch reco.log
starttime=`date +"%s"`.0
lar -c ${FCL1} \
    -n ${nevents} \
    -T ${output_file} \
    ${pfn} #>reco.log 2>&1
larExit=$?
endtime=`date +"%s"`.0

if [ $larExit -ne 0 ]; then
  echo "Error in reco1"
  cat reco.log
  exit $larExit
fi

if [ -n "${SKIPFCL2}" ]; then
  echo "$pfn" > justin-processed-pfns.txt
  exit 0
fi

#output_stage1_file=`ls *stage1.root`

starttime=`date +"%s"`.0
#lar -c ${FCL2} \
#    $output_stage1_file #>reco.log 2>&1
#larExit=$?
endtime=`date +"%s"`.0

if [ $larExit -ne 0 ]; then
  echo "Error in reco2"
  cat reco.log
  exit $larExit
fi



#output_reco_file=`ls *_reco.root`
output_mr_file=`ls *singlehit.root`

#new_mr_file=`echo $output_reco_file | sed -e "s/reco/reco_hists/"`
#mv $output_mr_file $new_mr_file
#output_mr_file=$new_mr_file

echo "Output files:"
#echo "\tReco: ${output_reco_file}"
echo "\tHists: ${output_mr_file}"

#echo "Forming reco metadata"
#python -m meta_maker --start_time $starttime --end_time $endtime --file_format "artroot" \
#                     --app_family "dunesw" --app_name "reco" --app_version ${DUNE_VERSION} \
#                     --data_tier "full-reconstructed" --get_events -p "$did" \
#                     --campaign "vd-protodune-top-det-reco" \
#                     --fcl $FCL1 \
#                     -f "${JUSTIN_SCOPE}:$output_reco_file" -j "${output_reco_file}.json"
#if [ $? -ne 0 ]; then
#  echo "Error in reco metadata"
#  exit 1
#fi
#echo "Ran successfully"
## TODO -- CHECK
#cat ${output_reco_file}.json

#echo "Forming hist metadata"
python -m meta_maker --start_time $starttime --end_time $endtime --file_format "root" \
                     --app_family "dunesw" --app_name "reco" --app_version ${DUNE_VERSION} \
                     --data_tier "root-tuple-virtual" -p "$did" \
                     --campaign "vd-protodune-det-reco" \
                     --fcl $FCL1 \
                     -f "${JUSTIN_SCOPE}:$output_mr_file" -j "${output_mr_file}.json"
# --parent_as_json \
if [ $? -ne 0 ]; then
  echo "Error in hist metadata"
  exit 1
fi
echo "formed"
cat ${output_mr_file}.json

echo "$pfn" > justin-processed-pfns.txt