Workflow 10822, Stage 1

Workflow	10822
Priority	50
Processors	1
Wall seconds	80000
Image	/cvmfs/singularity.opensciencegrid.org/fermilab/fnal-wn-sl7:latest
RSS bytes	6290407424 (5999 MiB)
Max distance for inputs	30.0
Enabled input RSEs	CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, MONTECARLO, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled output RSEs	CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled sites	BR_CBPF, CA_SFU, CA_Victoria, CERN, CH_UNIBE-LHEP, CZ_FZU, ES_CIEMAT, ES_PIC, FR_CCIN2P3, IT_CNAF, NL_NIKHEF, NL_SURFsara, UK_Bristol, UK_Brunel, UK_Durham, UK_Edinburgh, UK_Lancaster, UK_Liverpool, UK_Manchester, UK_Oxford, UK_QMUL, UK_RAL-PPD, UK_RAL-Tier1, UK_Sheffield, US_Colorado, US_FNAL-FermiGrid, US_FNAL-T1, US_Michigan, US_PuertoRico, US_SU-ITS, US_Swan, US_UChicago, US_UConn-HPC, US_UCSD, US_Wisconsin
Scope	usertests
Events for this stage

Output patterns

	Destination	Pattern	Lifetime	For next stage	RSE expression
1	Rucio usertests:calcuttj_pdhd_data_test-fnal-w10822s1p1	pdhd_prod_data*root	2592000	False

Environment variables

Name	Value
extra_fcl_path	/exp/dune/app/users/calcuttj/dunesw_standalone/fcl/protodunehd/reco/
nevents	1

File states

Total files	Finding	Unallocated	Allocated	Outputting	Processed	Not found	Failed
1	0	0	0	0	1	0	0

Job states

Total	Submitted	Started	Processing	Outputting	Finished	Notused	Aborted	Stalled	Jobscript error	Outputting failed	None processed
2	0	0	0	0	1	0	0	1	0	0	0

RSEs used

Name	Inputs	Outputs
DUNE_CERN_EOS	1	0
SURFSARA	0	1

Stats of processed input files as CSV or JSON, and of uploaded output files as CSV or JSON (up to 10000 files included)

Jobscript

#!/bin/sh
#
# Example jobscript that runs lar for all the files
# referred to by the MQL expression given on the justin command line.
#
# Submit with something like this:
#
# ./justin simple-workflow \
#  --max-distance 30 \
#  --mql "rucio-dataset protodune-sp:np04_raw_run_number_5769" \
#  --jobscript lar.jobscript
#
# Then monitor with dashboard or ./justin show-jobs --workflow-id ID
# where ID is the value printed by the first command
#


# the xroot lib for streaming non-root files is in testproducts, 
# so add it to the start of the path
source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh
if [ -z ${JUSTIN_PROCESSORS} ]; then
  JUSTIN_PROCESSORS=1
fi

echo "Justin processors: ${JUSTIN_PROCESSORS}"

export TF_NUM_THREADS=${JUSTIN_PROCESSORS}   
export OPENBLAS_NUM_THREADS=${JUSTIN_PROCESSORS} 
export JULIA_NUM_THREADS=${JUSTIN_PROCESSORS} 
export MKL_NUM_THREADS=${JUSTIN_PROCESSORS} 
export NUMEXPR_NUM_THREADS=${JUSTIN_PROCESSORS} 
export OMP_NUM_THREADS=${JUSTIN_PROCESSORS}  

# From jobsub
export CLUSTER=${CLUSTER:-1}
export PROCESS=${PROCESS:-1}

if [ -n "${extra_fcl_path}" ]; then
  echo "Adding ${extra_fcl_path} to fhicl file path"
  export FHICL_FILE_PATH=${extra_fcl_path}:${FHICL_FILE_PATH}
  echo $FHICL_FILE_PATH
fi

setup dunesw ${DUNESW_VERSION:-v10_10_04d00} -q e26:prof
setup_exit=$?
if [ "$setup_exit" != 0 ]; then
  echo "Error setting up dunesw ${DUNESW_VERSION}"
  exit
fi

# Get an unprocessed file from this stage
did_pfn_rse=`$JUSTIN_PATH/justin-get-file`
if [ "${did_pfn_rse}" == "" ] ; then
  echo "Could not get file"
  exit 0
fi

did=`echo $did_pfn_rse | cut -f1 -d' '`
pfn=`echo $did_pfn_rse | cut -f2 -d' '`
rse=`echo $did_pfn_rse | cut -f3 -d' '`
name_only=$(echo $did | cut -f2 -d':')
echo "name" $name_only


echo "Found input file URL $pfn at $rse"

if [ -n "${test_path}" ]; then
  pfn=${test_path}
  echo "Set pfn to test path ${pfn}"
fi

#Get the stage and momentum 
export stage=${stage:-"Gen"}
export momentum=${momentum:-1}


echo "Using gen fcl: ${gen_fcl}"

now=$(date -u +"%Y%m%dT%H%M%SZ")
jobid=`echo "${JUSTIN_JOBSUB_ID:-1}" | cut -f1 -d'@' | sed -e "s/\./_/"`
stageid=${JUSTIN_STAGE_ID:-1}
output_preamble="pdhd_prod_data_"

nevents=${nevents:--1}
nskip=${nskip:-0}
LD_PRELOAD=$XROOTD_LIB/libXrdPosixPreload.so lar \
  -c  standard_reco_stage1_protodunehd_keepup.fcl \
  -o temp.root \
  -n ${nevents} \
  --nskip ${nskip} \
  ${pfn}

larReturnCode=$?
echo "stage1 lar returns $larReturnCode"
if [ "$larReturnCode" != 0 ] ; then
  exit $larReturnCode
fi

#IonScintPDExt
lar \
    -c  standard_reco_stage2_calibration_protodunehd_keepup.fcl \
    -o ${output_preamble}_${jobid}_${stageid}_${now}.root \
    temp.root

larReturnCode=$?
echo "stage2 lar returns $larReturnCode"
if [ "$larReturnCode" != 0 ] ; then
  exit $larReturnCode
fi
#---------------------------------------------


####EDIT METADATA FOR THE FOLLOWING FILE
#${name_only}_${jobid}_${stageid}_${now}_detsim_reco1.root

# Record that we processed the input file ok (did we???)
echo "$pfn" > justin-processed-pfns.txt

# For debugging
for i in *.json
do
  echo "==== Start $i ===="
  cat $i
  echo "==== End $i ===="
done

ls -ltR

exit 0