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Workflow 11106, Stage 1

Priority50
Processors1
Wall seconds80000
Image/cvmfs/singularity.opensciencegrid.org/fermilab/fnal-wn-sl7:latest
RSS bytes9437184000 (9000 MiB)
Max distance for inputs90.0
Enabled input RSEs CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, MONTECARLO, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled output RSEs CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled sites BR_CBPF, CA_SFU, CA_Victoria, CERN, CH_UNIBE-LHEP, CZ_FZU, ES_CIEMAT, ES_PIC, FR_CCIN2P3, IT_CNAF, NL_NIKHEF, NL_SURFsara, UK_Bristol, UK_Brunel, UK_Durham, UK_Edinburgh, UK_Lancaster, UK_Liverpool, UK_Manchester, UK_Oxford, UK_QMUL, UK_RAL-PPD, UK_RAL-Tier1, UK_Sheffield, US_Colorado, US_FNAL-FermiGrid, US_FNAL-T1, US_Michigan, US_PuertoRico, US_SU-ITS, US_Swan, US_UChicago, US_UConn-HPC, US_UCSD, US_Wisconsin
Scopehd-protodune
Events for this stage

Output patterns

 DestinationPatternLifetimeFor next stageRSE expression
1Rucio hd-protodune:DetsimReco1_-1GeV_ritm2592486-fnal-w11106s1p1*reco1.root8640000False

Environment variables

NameValue
INPUT_TAR_DIR_LOCAL/cvmfs/fifeuser1.opensciencegrid.org/sw/dune/751dcb45050996a78957233c82ccc80a7736ba74/
momentum1
stageDetsimReco

File states

Total filesFindingUnallocatedAllocatedOutputtingProcessedNot foundFailed
100000000999208

Job states

TotalSubmittedStartedProcessingOutputtingFinishedNotusedAbortedStalledJobscript errorOutputting failedNone processed
1192400001018202993601510671
Files processed002002004004006006008008001000100012001200140014001600160018001800200020002200220024002400260026002800280030003000Dec-08 23:00Dec-09 06:00Dec-09 13:00Dec-09 20:00Dec-10 03:00Dec-10 10:00Dec-10 17:00Dec-11 00:00Dec-11 07:00Dec-11 14:00Dec-11 21:00Dec-12 04:00Dec-12 11:00Dec-12 18:00Dec-13 01:00Dec-13 08:00Dec-13 15:00Dec-13 22:00Dec-14 05:00Dec-14 12:00Files processedBin start timesNumber per binNL_SURFsaraUK_QMULCA_SFUUK_ManchesterUK_LancasterUK_BrunelUK_RAL-PPDUS_UChicagoES_PICUS_WisconsinUS_FNAL-FermiG…US_FNAL-FermiGridIT_CNAFUS_UCSDCERNUK_DurhamUK_OxfordUS_ColoradoUK_EdinburghUK_BristolFR_CCIN2P3CZ_FZU
Replicas per RSE9745400.83129093841694352.534984809732474354.1224438480022137.56145356981796155374.83741501862727134.59618595649147Replicas per RSEDUNE_US_FNAL_DISK_STAGE (93%)DUNE_US_BNL_SDCC (4%)DUNE_CA_SFU (1%)

RSEs used

NameInputsOutputs
DUNE_US_FNAL_DISK_STAGE108769991
DUNE_US_BNL_SDCC2460
DUNE_CA_SFU2090
DUNE_UK_MANCHESTER_CEPH01

Stats of processed input files as CSV or JSON, and of uploaded output files as CSV or JSON (up to 10000 files included)

File reset events, by site

SiteAllocatedOutputting
US_FNAL-FermiGrid236146
CA_SFU1166
NL_SURFsara5835
CA_Victoria450
UK_Manchester35156
ES_PIC3317
UK_QMUL2024
CERN1845
UK_Brunel1520
IT_CNAF1520
US_UChicago1434
UK_RAL-PPD1196
UK_Lancaster623
US_Wisconsin512
US_UCSD46
US_PuertoRico20
UK_Durham228
UK_Edinburgh12
US_Colorado16
UK_Bristol02
FR_CCIN2P301

Jobscript

#!/bin/sh
#
# Example jobscript that runs lar for all the files
# referred to by the MQL expression given on the justin command line.
#
# Submit with something like this:
#
# ./justin simple-workflow \
#  --max-distance 30 \
#  --mql "rucio-dataset protodune-sp:np04_raw_run_number_5769" \
#  --jobscript lar.jobscript
#
# Then monitor with dashboard or ./justin show-jobs --workflow-id ID
# where ID is the value printed by the first command
#


# the xroot lib for streaming non-root files is in testproducts, 
# so add it to the start of the path
source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh
if [ -z ${JUSTIN_PROCESSORS} ]; then
  JUSTIN_PROCESSORS=1
fi

echo "Justin processors: ${JUSTIN_PROCESSORS}"

export TF_NUM_THREADS=${JUSTIN_PROCESSORS}   
export OPENBLAS_NUM_THREADS=${JUSTIN_PROCESSORS} 
export JULIA_NUM_THREADS=${JUSTIN_PROCESSORS} 
export MKL_NUM_THREADS=${JUSTIN_PROCESSORS} 
export NUMEXPR_NUM_THREADS=${JUSTIN_PROCESSORS} 
export OMP_NUM_THREADS=${JUSTIN_PROCESSORS}  

# From jobsub
export CLUSTER=${CLUSTER:-1}
export PROCESS=${PROCESS:-1}

setup dunesw ${DUNESW_VERSION:-v10_10_04d01} -q e26:prof
setup_exit=$?
if [ "$setup_exit" != 0 ]; then
  echo "Error setting up dunesw ${DUNESW_VERSION}"
  exit
fi

# Get an unprocessed file from this stage
did_pfn_rse=`$JUSTIN_PATH/justin-get-file`
if [ "${did_pfn_rse}" == "" ] ; then
  echo "Could not get file"
  exit 0
fi

# Keep a record of all input DIDs, for pdjson2meta file -> DID mapping
echo "$did_pfn_rse" | cut -f1 -d' ' >>all-input-dids.txt

did=`echo $did_pfn_rse | cut -f1 -d' '`
pfn=`echo $did_pfn_rse | cut -f2 -d' '`
rse=`echo $did_pfn_rse | cut -f3 -d' '`
name_only=$(echo $did | cut -f2 -d':')
echo "name" $name_only


echo "Found input file URL $pfn at $rse"

#Get the stage and momentum 
export stage=${stage:-"Gen"}
export momentum=${momentum:-1}

if [ "$momentum" == 1 ]; then
  export gen_fcl="pdhd_1GeV_h4input_cosmics.fcl"
elif [ "$momentum" == 5 ]; then
  export gen_fcl="pdhd_5GeV_h4input_cosmics.fcl"
else
  echo "Error. Provided invalid momentum: ${momentum}. Can only use 1 or 5"
  exit 1
fi
echo "Using gen fcl: ${gen_fcl}"

now=$(date -u +"%Y%m%dT%H%M%SZ")
jobid=`echo "${JUSTIN_JOBSUB_ID:-1}" | cut -f1 -d'@' | sed -e "s/\./_/"`
stageid=${JUSTIN_STAGE_ID:-1}
output_preamble="pdhd_prod_beam_"

nevents=${nevents:--1}
nskip=${nskip:-0}
echo "RUNNING STAGE ${stage}"
#-------------- GEN STAGE --------------------
if [ "$stage" == "Gen" ]; then
  if [[ $nevents -gt 10 || $nevents -lt 1 ]]; then
    echo "Setting nevents to 10 in gen"
    nevents=10
  fi
  #Generation
  LD_PRELOAD=$XROOTD_LIB/libXrdPosixPreload.so lar \
      -n  ${nevents} \
      --nskip ${nskip} \
      -c  ${gen_fcl} \
      -o temp_gen.root \
      $pfn

  larReturnCode=$?
  echo "gen lar returns $larReturnCode"
  if [ "$larReturnCode" != 0 ] ; then
    exit $larReturnCode
  fi
  #Generation Done

  #G4
  lar \
      -c  standard_g4_protodunehd_stage1.fcl \
      -o temp_largeant.root \
      temp_gen.root

  larReturnCode=$?
  echo "g4 lar returns $larReturnCode"
  if [ "$larReturnCode" != 0 ] ; then
    exit $larReturnCode
  fi
  #G4 Done
  rm temp_gen.root #remove previous file
  #IonScintPDExt
  lar \
      -c  standard_g4_protodunehd_IonScint_PDExt.fcl \
      -o ${output_preamble}_${jobid}_${stageid}_${now}_gen_g4_IonScintPDExt.root \
      temp_largeant.root

  larReturnCode=$?
  echo "ionscint pdext lar returns $larReturnCode"
  if [ "$larReturnCode" != 0 ] ; then
    exit $larReturnCode
  fi
  #IonScintPDExt Done
  rm temp_largeant.root #remove the previous file
#---------------------------------------------

#-------------- PD STAGE --------------------
elif [ "$stage" = "PD" ]; then 
  #TPC1
  lar \
      -n ${nevents} \
      --nskip ${nskip} \
      -c  standard_g4_protodunehd_PDInt_TPC1.fcl \
      -o temp_PD_TPC1.root \
      $pfn

  larReturnCode=$?
  echo "PD TPC1 returns $larReturnCode"
  if [ "$larReturnCode" != 0 ] ; then
    exit $larReturnCode
  fi
  #TPC1 Done

  #TPC2
  lar \
      -c  standard_g4_protodunehd_PDInt_TPC2.fcl \
      -o temp_PD_TPC2.root \
      temp_PD_TPC1.root

  larReturnCode=$?
  echo "PD TPC2 returns $larReturnCode"
  if [ "$larReturnCode" != 0 ] ; then
    exit $larReturnCode
  fi
  #TPC2 Done
  rm temp_PD_TPC1.root ##Clean up the previous file 
  #TPC5
  lar \
      -c  standard_g4_protodunehd_PDInt_TPC5.fcl \
      -o temp_PD_TPC5.root \
      temp_PD_TPC2.root

  larReturnCode=$?
  echo "PD TPC5 returns $larReturnCode"
  if [ "$larReturnCode" != 0 ] ; then
    exit $larReturnCode
  fi
  #TPC5 Done
  rm temp_PD_TPC2.root ##Clean up the previous file 
  #TPC6
  lar \
      -c  standard_g4_protodunehd_PDInt_TPC6.fcl \
      -o ${name_only}_${jobid}_${stageid}_${now}_PDInt.root \
      temp_PD_TPC5.root

  larReturnCode=$?
  echo "PD TPC6 returns $larReturnCode"
  if [ "$larReturnCode" != 0 ] ; then
    exit $larReturnCode
  fi
  #TPC6 Done
  rm temp_PD_TPC5.root ##Clean up the previous file 
#--------------------------------------------

#-------------- DetsimReco STAGE --------------------
elif [ "$stage" == "DetsimReco" ]; then
  #Detsim
  lar \
      -n ${nevents} \
      --nskip ${nskip} \
      -c  standard_detsim_protodunehd.fcl \
      -o temp_detsim.root \
      $pfn

  larReturnCode=$?
  echo "Detsim returns $larReturnCode"
  if [ "$larReturnCode" != 0 ] ; then
    exit $larReturnCode
  fi
  #Detsim Done


  #Reco
  lar \
      -c  standard_reco_protodunehd_MC.fcl \
      -o ${output_preamble}_gen_g4_IonScintPDExt_PDInt_${jobid}_${stageid}_${now}_detsim_reco1.root \
      temp_detsim.root

  #Do not need to save parent info
  rm -fr all-input-dids.txt
  echo "noparents:noparents.root" > all-input-dids.txt 


  larReturnCode=$?
  echo "Reco returns $larReturnCode"
  if [ "$larReturnCode" != 0 ] ; then
    exit $larReturnCode
  fi
  #Reco Done
  rm temp_detsim.root #remove parent file
  OUTFILE=`ls *reco1.root`
  extractor_prod.py --infile ${OUTFILE}  --no_crc    --appfamily art --appname reco --appversion   10_10_04d01  --requestid 2592486  --input_json $INPUT_TAR_DIR_LOCAL/pdhd_input_${momentum}GeV.json > ${OUTFILE}.ext.json  && sed -i -e 's/physics/fardet-hd/g' ${OUTFILE}.ext.json

#Nov 12
#  python ${INPUT_TAR_DIR_LOCAL}/pdjson2metadata ${OUTFILE}.root.ext.json  all-input-dids.txt usertests > ${OUTFILE}.temp.json
  python ${INPUT_TAR_DIR_LOCAL}/pdjson2metadata ${OUTFILE}.ext.json  all-input-dids.txt usertests > ${OUTFILE}.temp.json

  sed '/DUNE/ s/.*/\L&/' ${OUTFILE}.temp.json > ${OUTFILE}.json 
else
  echo "ERROR. Provided invalid stage ${stage}. Can only provide one of: (Gen, PD, DetsimReco)"
  exit 3
fi
 
# Record that we processed the input file ok (did we???)
echo "$pfn" > justin-processed-pfns.txt

# For debugging
for i in *.json
do
  echo "==== Start $i ===="
  cat $i
  echo "==== End $i ===="
done

ls -ltR

exit 0
justIN time: 2025-12-18 23:24:05 UTC       justIN version: 01.05.03