Stats of processed input files as CSV or JSON, and of uploaded output files as CSV or JSON (up to 10000 files included)
File reset events, by site
Site
Allocated
Outputting
NL_NIKHEF
203
0
UK_QMUL
4
0
ES_PIC
2
0
NL_SURFsara
1
0
UK_RAL-PPD
0
5
Jobscript
#!/bin/bash
:<<'EOF'
To use this jobscript to process 5 files from the dataset fardet-hd__fd_mc_2023a_reco2__full-reconstructed__v09_81_00d02__standard_reco2_dune10kt_nu_1x2x6__prodgenie_nu_dune10kt_1x2x6__out1__validation
data and put the output in the $USER namespace (MetaCat) and saves the output in /scratch
Use this command to create the workflow:
justin simple-workflow \
--mql \
"files from fardet-hd:fardet-hd__fd_mc_2023a_reco2__full-reconstructed__v09_81_00d02__standard_reco2_dune10kt_nu_1x2x6__prodgenie_nu_dune10kt_1x2x6__out1__validation limit 5 ordered"\
--jobscript submit_ana.jobscript --rss-mb 4000 \
--scope higuera --output-pattern '*_ana_*.root:$FNALURL/$USERF'
The following optional environment variables can be set when creating the
workflow/stage: FCL_FILE, NUM_EVENTS, DUNE_VERSION, DUNE_QUALIFIER
EOF
# fcl file and DUNE software version/qualifier to be used
FCL_FILE_G4=${FCL_FILE:-$FCL_TAR_DIR_LOCAL/fcls/detsyst_ionandscint_dune10kt_1x2x6.fcl}
FCL_FILE_DS=${FCL_FILE:-$FCL_TAR_DIR_LOCAL/fcls/detsyst_detsim_dune10kt_1x2x6.fcl}
FCL_FILE_R1=${FCL_FILE:-$FCL_TAR_DIR_LOCAL/fcls/detsyst_reco1_dune10kt_1x2x6.fcl}
FCL_FILE_R2=${FCL_FILE:-$FCL_TAR_DIR_LOCAL/fcls/detsyst_reco2_dune10kt_1x2x6.fcl}
FCL_FILE_CF=${FCL_FILE:-cafmaker_atmos_dune10kt_1x2x6_runreco-nuenergy-nuangular_geov5.fcl}
DUNE_VERSION_DS_R1=${DUNE_VERSION:-v09_79_00d02} # used for detsim and reco1 stages in official atmospherics production
DUNE_VERSION_R2=${DUNE_VERSION:-v09_85_00d00} # used for reco2 stage in official atmosperics production
DUNE_VERSION_CF=${DUNE_VERSION:-v10_09_00d00} # cotheta bug fixed
DUNE_QUALIFIER=${DUNE_QUALIFIER:-e26:prof}
# number of events to process from the input file
if [ "$NUM_EVENTS" != "" ] ; then
events_option="-n $NUM_EVENTS"
echo "Events option $events_option"
fi
# First get an unprocessed file from this stage
did_pfn_rse=`$JUSTIN_PATH/justin-get-file`
if [ "$did_pfn_rse" = "" ] ; then
echo "Nothing to process - exit jobscript"
exit 0
fi
# Keep a record of all input DIDs, for pdjson2meta file -> DID mapping
echo "$did_pfn_rse" | cut -f1 -d' ' >>all-input-dids.txt
# pfn is also needed when creating justin-processed-pfns.txt
pfn=`echo $did_pfn_rse | cut -f2 -d' '`
echo "Input PFN = $pfn"
# Setup DUNE environment
source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh
setup dunesw "$DUNE_VERSION_DS_R1" -q "$DUNE_QUALIFIER"
# Construct outFile from input $pfn
now=$(date -u +"%Y-%m-%dT_%H%M%SZ")
Ffname=`echo $pfn | awk -F/ '{print $NF}'`
fname=`echo $Ffname | awk -F. '{print $1}'`
outFile_g4=${fname}_${now}_g4.root
outFile_ds=${fname}_${now}_g4_detsim.root
outFile_r1=${fname}_${now}_g4_detsim_reco1.root
outFile_r2=${fname}_${now}_g4_detsim_reco1_reco2.root
outFile_cf=${fname}_${now}_g4_detsim_reco1_reco2_caf.root
campaign="justIN.w${JUSTIN_WORKFLOW_ID}s${JUSTIN_STAGE_ID}"
echo "using fcl file for detsim" ${FCL_FILE_DS}
# Here is where the LArSoft command is call it
(
# Do the scary preload stuff in a subshell!
export LD_PRELOAD=${XROOTD_LIB}/libXrdPosixPreload.so
echo "$LD_PRELOAD"
lar -c $FCL_FILE_G4 $events_option -o $outFile_g4 "$pfn" > ${fname}_ana_${now}.log 2>&1
lar -c $FCL_FILE_DS $events_option -o $outFile_ds $outFile_g4 > ${fname}_ana_${now}.log 2>&1
lar -c $FCL_FILE_R1 $events_option -o $outFile_r1 $outFile_ds > ${fname}_ana_${now}.log 2>&1
)
# Setup DUNE environment for reco2
source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh
setup dunesw "$DUNE_VERSION_R2" -q "$DUNE_QUALIFIER"
echo "using fcl file for reco2" ${FCL_FILE_R2}
#run reco2
(
# Do the scary preload stuff in a subshell!
export LD_PRELOAD=${XROOTD_LIB}/libXrdPosixPreload.so
echo "$LD_PRELOAD"
lar -c $FCL_FILE_R2 $events_option -o $outFile_r2 $outFile_r1 > ${fname}_ana_${now}.log 2>&1
)
# Setup DUNE environment for cafmaker
source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh
setup dunesw "$DUNE_VERSION_CF" -q "$DUNE_QUALIFIER"
echo "using fcl file for CAFmaker" ${FCL_FILE_CF}
#run cafmaker
(
# Do the scary preload stuff in a subshell!
export LD_PRELOAD=${XROOTD_LIB}/libXrdPosixPreload.so
echo "$LD_PRELOAD"
lar -c $FCL_FILE_CF $events_option $outFile_r2 > ${fname}_ana_${now}.log 2>&1
test -f caf.root && ifdh cp caf.root $outFile_cf
)
echo '=== Start last 100 lines of lar log file ==='
tail -100 ${fname}_ana_${now}.log
echo '=== End last 100 lines of lar log file ==='
# Subshell exits with exit code of last command
larExit=$?
echo "lar exit code $larExit"
if [ $larExit -eq 0 ] ; then
# Success !
echo "$pfn" > justin-processed-pfns.txt
jobscriptExit=0
else
# Oh :(
jobscriptExit=1
fi
# Create compressed tar file with all log files
tar zcf `echo "$JUSTIN_JOBSUB_ID.logs.tgz" | sed 's/@/_/g'` *.log
exit $jobscriptExit
justIN time: 2025-12-19 01:24:26 UTC justIN version: 01.05.03
