Workflow 11239, Stage 1

Priority	50
Processors	1
Wall seconds	80000
Image	/cvmfs/singularity.opensciencegrid.org/fermilab/fnal-wn-sl7:latest
RSS bytes	9437184000 (9000 MiB)
Max distance for inputs	30.0
Enabled input RSEs	CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, MONTECARLO, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled output RSEs	CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled sites	BR_CBPF, CA_SFU, CA_Victoria, CERN, CH_UNIBE-LHEP, CZ_FZU, ES_CIEMAT, ES_PIC, FR_CCIN2P3, IT_CNAF, NL_NIKHEF, NL_SURFsara, UK_Bristol, UK_Brunel, UK_Durham, UK_Edinburgh, UK_Glasgow, UK_Imperial, UK_Lancaster, UK_Liverpool, UK_Manchester, UK_Oxford, UK_QMUL, UK_RAL-PPD, UK_RAL-Tier1, UK_Sheffield, US_BNL, US_Colorado, US_FNAL-FermiGrid, US_FNAL-T1, US_Michigan, US_NotreDame, US_PuertoRico, US_SU-ITS, US_Swan, US_UChicago, US_UConn-HPC, US_UCSD, US_Wisconsin
Scope	usertests
Events for this stage

Output patterns

	Destination	Pattern	Lifetime	For next stage	RSE expression
1	Rucio usertests:avizcaya_mc-5_S3_wirefilt-fnal-w11239s1p1	*_detsim_reco1.root	5184000	False

Environment variables

Name	Value
extra_fcl_path	/cvmfs/fifeuser4.opensciencegrid.org/sw/dune/e7894075a3f98381637f366777614cddde9c2c5d
momentum	5
reco_fcl	wirefilter_reco_protodunehd_MC.fcl
stage	DetsimReco

File states

Total files	Finding	Unallocated	Allocated	Outputting	Processed	Not found	Failed
168	0	0	4	0	164	0	0

Job states

Total	Submitted	Started	Processing	Outputting	Finished	Notused	Aborted	Stalled	Jobscript error	Outputting failed	None processed
366	0	0	4	0	250	0	4	29	0	79	0

RSEs used

Name	Inputs	Outputs
DUNE_US_FNAL_DISK_STAGE	198	104
DUNE_US_BNL_SDCC	59	46
DUNE_CA_SFU	1	14

Stats of processed input files as CSV or JSON, and of uploaded output files as CSV or JSON (up to 10000 files included)

File reset events, by site

Site	Allocated	Outputting
CA_SFU	14	0
US_FNAL-FermiGrid	8	20
US_FNAL-T1	7	10
CA_Victoria	4	0
US_UChicago	0	27

Jobscript

#!/bin/sh
#
# Example jobscript that runs lar for all the files
# referred to by the MQL expression given on the justin command line.
#
# Submit with something like this:
#
# ./justin simple-workflow \
#  --max-distance 30 \
#  --mql "rucio-dataset protodune-sp:np04_raw_run_number_5769" \
#  --jobscript lar.jobscript
#
# Then monitor with dashboard or ./justin show-jobs --workflow-id ID
# where ID is the value printed by the first command
#


# the xroot lib for streaming non-root files is in testproducts, 
# so add it to the start of the path
source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh
if [ -z ${JUSTIN_PROCESSORS} ]; then
  JUSTIN_PROCESSORS=1
fi

echo "Justin processors: ${JUSTIN_PROCESSORS}"

export TF_NUM_THREADS=${JUSTIN_PROCESSORS}   
export OPENBLAS_NUM_THREADS=${JUSTIN_PROCESSORS} 
export JULIA_NUM_THREADS=${JUSTIN_PROCESSORS} 
export MKL_NUM_THREADS=${JUSTIN_PROCESSORS} 
export NUMEXPR_NUM_THREADS=${JUSTIN_PROCESSORS} 
export OMP_NUM_THREADS=${JUSTIN_PROCESSORS}  

# From jobsub
export CLUSTER=${CLUSTER:-1}
export PROCESS=${PROCESS:-1}

setup dunesw ${DUNESW_VERSION:-v10_10_04d00} -q e26:prof
setup_exit=$?
if [ "$setup_exit" != 0 ]; then
  echo "Error setting up dunesw ${DUNESW_VERSION}"
  exit
fi


if [ -n "${extra_fcl_path}" ]; then
  echo "ADDING ${extra_fcl_path} to fcl file path"
  sleep 1
  export FHICL_FILE_PATH=${extra_fcl_path}:${FHICL_FILE_PATH}
fi

# Get an unprocessed file from this stage
did_pfn_rse=`$JUSTIN_PATH/justin-get-file`
if [ "${did_pfn_rse}" == "" ] ; then
  echo "Could not get file"
  exit 0
fi

did=`echo $did_pfn_rse | cut -f1 -d' '`
pfn=`echo $did_pfn_rse | cut -f2 -d' '`
rse=`echo $did_pfn_rse | cut -f3 -d' '`
name_only=$(echo $did | cut -f2 -d':')
echo "name" $name_only


echo "Found input file URL $pfn at $rse"

#Get the stage and momentum 
export stage=${stage:-"Gen"}
export momentum=${momentum:-1}

if [ "$momentum" == 1 ]; then
  export gen_fcl="pdhd_1GeV_h4input_cosmics.fcl"
elif [ "$momentum" == 5 ]; then
  export gen_fcl="pdhd_5GeV_h4input_cosmics.fcl"
else
  echo "Error. Provided invalid momentum: ${momentum}. Can only use 1 or 5"
  exit 1
fi
echo "Using gen fcl: ${gen_fcl}"

now=$(date -u +"%Y%m%dT%H%M%SZ")
jobid=`echo "${JUSTIN_JOBSUB_ID:-1}" | cut -f1 -d'@' | sed -e "s/\./_/"`
stageid=${JUSTIN_STAGE_ID:-1}
output_preamble="pdhd_prod_beam_"

nevents=${nevents:--1}
nskip=${nskip:-0}
echo "RUNNING STAGE ${stage}"
#-------------- GEN STAGE --------------------
if [ "$stage" == "Gen" ]; then
  echo "-------- running generation ---------"
  if [[ $nevents -gt 10 || $nevents -lt 1 ]]; then
    echo "Setting nevents to 10 in gen"
    nevents=10
  fi
  #Generation
  LD_PRELOAD=$XROOTD_LIB/libXrdPosixPreload.so lar \
      -n  ${nevents} \
      --nskip ${nskip} \
      -c  ${gen_fcl} \
      -o temp_gen.root \
      $pfn

  larReturnCode=$?
  echo "gen lar returns $larReturnCode"
  if [ "$larReturnCode" != 0 ] ; then
    exit $larReturnCode
  fi
  #Generation Done

  #G4
  echo "-------- running G4 ---------"
  lar \
      -c  standard_g4_protodunehd_stage1.fcl \
      -o temp_largeant.root \
      temp_gen.root

  larReturnCode=$?
  echo "g4 lar returns $larReturnCode"
  if [ "$larReturnCode" != 0 ] ; then
    exit $larReturnCode
  fi
  #G4 Done

  #IonScintPDExt
  echo "-------- running IonScintPDExt ---------"
  lar \
      -c  standard_g4_protodunehd_IonScint_PDExt.fcl \
      -o ${output_preamble}_${jobid}_${stageid}_${now}_gen_g4_IonScintPDExt.root \
      temp_largeant.root

  larReturnCode=$?
  echo "ionscint pdext lar returns $larReturnCode"
  if [ "$larReturnCode" != 0 ] ; then
    exit $larReturnCode
  fi
  #IonScintPDExt Done
#---------------------------------------------

#-------------- PD STAGE --------------------
elif [ "$stage" = "PD" ]; then 
  #TPC1
  lar \
      -n ${nevents} \
      --nskip ${nskip} \
      -c  standard_g4_protodunehd_PDInt_TPC1.fcl \
      -o temp_PD_TPC1.root \
      $pfn

  larReturnCode=$?
  echo "PD TPC1 returns $larReturnCode"
  if [ "$larReturnCode" != 0 ] ; then
    exit $larReturnCode
  fi
  #TPC1 Done

  #TPC2
  lar \
      -c  standard_g4_protodunehd_PDInt_TPC2.fcl \
      -o temp_PD_TPC2.root \
      temp_PD_TPC1.root

  larReturnCode=$?
  echo "PD TPC2 returns $larReturnCode"
  if [ "$larReturnCode" != 0 ] ; then
    exit $larReturnCode
  fi
  #TPC2 Done

  #TPC5
  lar \
      -c  standard_g4_protodunehd_PDInt_TPC5.fcl \
      -o temp_PD_TPC5.root \
      temp_PD_TPC2.root

  larReturnCode=$?
  echo "PD TPC5 returns $larReturnCode"
  if [ "$larReturnCode" != 0 ] ; then
    exit $larReturnCode
  fi
  #TPC5 Done

  #TPC6
  lar \
      -c  standard_g4_protodunehd_PDInt_TPC6.fcl \
      -o ${name_only}_${jobid}_${stageid}_${now}_PDInt.root \
      temp_PD_TPC5.root

  larReturnCode=$?
  echo "PD TPC6 returns $larReturnCode"
  if [ "$larReturnCode" != 0 ] ; then
    exit $larReturnCode
  fi
  #TPC6 Done
#--------------------------------------------

#-------------- DetsimReco STAGE --------------------
elif [ "$stage" == "DetsimReco" ]; then
  echo "-------- running DetsimReco ---------" 
  #Detsim
  lar \
      -n ${nevents} \
      --nskip ${nskip} \
      -c  standard_detsim_protodunehd.fcl \
      -o temp_detsim.root \
      $pfn

  larReturnCode=$?
  echo "Detsim returns $larReturnCode"
  if [ "$larReturnCode" != 0 ] ; then
    exit $larReturnCode
  fi
  #Detsim Done

  echo "-------- running Reco ---------"
  reco_fcl=${reco_fcl:-standard_reco_protodunehd_MC.fcl}
  echo "Using the fcl file: $reco_fcl"

  #Reco
  lar \
      -c  ${reco_fcl} \
      -o ${name_only}_${jobid}_${stageid}_${now}_detsim_reco1.root \
      temp_detsim.root

  larReturnCode=$?
  echo "Reco returns $larReturnCode"
  if [ "$larReturnCode" != 0 ] ; then
    exit $larReturnCode
  fi
  #Reco Done

else
  echo "ERROR. Provided invalid stage ${stage}. Can only provide one of: (Gen, PD, DetsimReco)"
  exit 3
fi

####EDIT METADATA FOR THE FOLLOWING FILE
#${name_only}_${jobid}_${stageid}_${now}_detsim_reco1.root

# Record that we processed the input file ok (did we???)
echo "$pfn" > justin-processed-pfns.txt

# For debugging
#for i in *.json
#do
#  echo "==== Start $i ===="
#  cat $  echo "==== End $i ===="
#  echo "==== End $i ===="
#done

ls -ltR

exit 0