Workflow 11962, Stage 1

Workflow	11962
Campaign	360
Priority	50
Processors	1
Wall seconds	3600
Image	/cvmfs/singularity.opensciencegrid.org/fermilab/fnal-wn-sl7:latest
RSS bytes	4194304000 (4000 MiB)
Max distance for inputs	30.0
Enabled input RSEs	CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, MONTECARLO, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled output RSEs	CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled sites	BR_CBPF, CA_SFU, CA_Victoria, CERN, CH_UNIBE-LHEP, CZ_FZU, ES_CIEMAT, ES_PIC, FR_CCIN2P3, IT_CNAF, NL_NIKHEF, NL_SURFsara, UK_Bristol, UK_Brunel, UK_Durham, UK_Edinburgh, UK_Glasgow, UK_Imperial, UK_Lancaster, UK_Liverpool, UK_Manchester, UK_Oxford, UK_QMUL, UK_RAL-PPD, UK_RAL-Tier1, UK_Sheffield, US_BNL, US_Colorado, US_FNAL-FermiGrid, US_FNAL-T1, US_Michigan, US_NotreDame, US_PuertoRico, US_SU-ITS, US_Swan, US_UChicago, US_UConn-HPC, US_UCSD, US_Wisconsin
Scope	usertests
Events for this stage

Output patterns

	Destination	Pattern	Lifetime	For next stage	RSE expression
1	https://fndcadoor.fnal.gov:2880/dune/scratch/users/ykermaid/fnal/11962/1	*.root

Environment variables

Name	Value
FHICL_FILE	standard_reco_stage1_protodunevd_offline_reproc.fcl
METADATA_DIR	/cvmfs/fifeuser4.opensciencegrid.org/sw/dune/8f7772a7f65cb4d1e913b12cc5b1930b1b58d558
NEVENTS	-1
WIRECELL_CFG	/cvmfs/fifeuser3.opensciencegrid.org/sw/dune/b82577ef23a78703ca6de4597541c2bbbf36f3c9
WIRECELL_TOOLKIT	/cvmfs/fifeuser2.opensciencegrid.org/sw/dune/08ba6deac42974c2d3188156ca9518d0f2d7ce1a

Condor Class Ads

Name	Value
HAS_CVMFS_dune_osgstorage_org	true

File states

Total files	Finding	Unallocated	Allocated	Outputting	Processed	Not found	Failed
1	0	0	0	0	0	0	1

Job states

Total	Submitted	Started	Processing	Outputting	Finished	Notused	Aborted	Stalled	Jobscript error	Outputting failed	None processed
11	0	0	0	0	5	0	0	0	6	0	0

RSEs used

Name	Inputs	Outputs
NIKHEF	4	0
DUNE_UK_MANCHESTER_CEPH	2	0

Stats of processed input files as CSV or JSON, and of uploaded output files as CSV or JSON (up to 10000 files included)

Jobscript

#!/bin/bash
#

source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh
setup metacat
export METACAT_SERVER_URL=https://metacat.fnal.gov:9443/dune_meta_prod/app
export METACAT_AUTH_SERVER_URL=https://metacat.fnal.gov:8143/auth/dune

DUNE_TAG=v10_16_00d00
#Setup recent lar software suite
DUNE_VERSION=${DUNE_VERSION:-${DUNE_TAG}}
setup dunesw \
   "${DUNE_VERSION}" \
   -q "${DUNE_QUALIFIER:-e26:prof}"

if [ $? -ne 0 ]; then
  echo "Failed to setup dunesw $DUNE_VERSION $DUNE_QUALIFIER"
  exit 1
fi

if [ -n "${METADATA_DIR}" ]; then
  stat ${METADATA_DIR}
  if [ $? -ne 0 ]; then
    echo "failed to stat metadata dir"
  fi

  echo "metadata dir contents:"
  ls $METADATA_DIR
  PYTHONPATH=${METADATA_DIR}:$PYTHONPATH
fi

export WIRECELL_PATH=${WIRECELL_CFG}/wire-cell-cfg:$WIRECELL_PATH
export LD_LIBRARY_PATH=/cvmfs/larsoft.opensciencegrid.org/products/jsonnet/v0_17_0a/Linux64bit+3.10-2.17-e20-prof/lib:$LD_LIBRARY_PATH
export LD_LIBRARY_PATH=${WIRECELL_TOOLKIT}/wire-cell-toolkit/install/lib:$LD_LIBRARY_PATH
export FHICL_FILE_PATH=${METADATA_DIR}:${FHICL_FILE_PATH}

#FCL1=${FCL1:-"standard_reco_stage1_protodunevd_offline_reproc.fcl"}
FCL1=${FCL1:-${FHICL_FILE}}

echo "FCL1 dump:" ${FCL1}
fhicl-dump ${FCL1}
if [ $? -ne 0 ]; then
  echo "fhicl-dump ${FCL1} failed"
  exit 1
fi

echo "DUNESW loc:"
ups active | grep dunesw

if [ -z ${JUSTIN_PROCESSORS} ]; then
  JUSTIN_PROCESSORS=1
fi

echo "Justin processors: ${JUSTIN_PROCESSORS}"

export TF_NUM_THREADS=${JUSTIN_PROCESSORS}   
export OPENBLAS_NUM_THREADS=${JUSTIN_PROCESSORS} 
export JULIA_NUM_THREADS=${JUSTIN_PROCESSORS} 
export MKL_NUM_THREADS=${JUSTIN_PROCESSORS} 
export NUMEXPR_NUM_THREADS=${JUSTIN_PROCESSORS} 
export OMP_NUM_THREADS=${JUSTIN_PROCESSORS}  

echo "printing env"
env

echo "Will use justin-get-file"
#
DID_PFN_RSE=`$JUSTIN_PATH/justin-get-file`
##Check that any file was returned
if [ "${DID_PFN_RSE}" == "" ] ; then
  echo "Could not get file"
  exit 0
fi

pfn=`echo ${DID_PFN_RSE} | cut -f2 -d' '`
did=`echo ${DID_PFN_RSE} | cut -f1 -d' '`
echo "pfn: ${pfn}"
echo "did: ${did}"
now=$(date -u +"%Y%m%dT%H%M%SZ")

#output_file=$(basename ${pfn%.*})_${now}_singlehit.root
#echo "output_file: $output_file"

nevents=${NEVENTS:--1}

extra_line=""
if [ -n "${SKIPFCL2}" ]; then
  jobsub_id=`echo ${JUSTIN_JOBSUB_ID:-1.1@1} | cut -f1 -d'@' | sed -e"s/\./_/"`
fi

echo "Running reco stage1"
touch reco.log
starttime=`date +"%s"`.0
if [[ "${FCL1}" == *"stage0"* ]]; then
    LD_PRELOAD=$XROOTD_LIB/libXrdPosixPreload.so lar -c ${FCL1} \
    -n ${nevents} \
    ${pfn} #>reco.log 2>&1
else
    lar -c ${FCL1} \
    -n ${nevents} \
    ${pfn} #>reco.log 2>&
fi
larExit=$?
endtime=`date +"%s"`.0

if [ $larExit -ne 0 ]; then
  echo "Error in reco1"
  cat reco.log
  exit $larExit
fi

if [ -n "${SKIPFCL2}" ]; then
  echo "$pfn" > justin-processed-pfns.txt
  exit 0
fi

#output_stage1_file=`ls *stage1.root`

#starttime=`date +"%s"`.0
#lar -c ${FCL2} \
#    $output_stage1_file #>reco.log 2>&1
#larExit=$?
#endtime=`date +"%s"`.0

if [ $larExit -ne 0 ]; then
  echo "Error in reco2"
  cat reco.log
  exit $larExit
fi

if [ $(ls *_reproc.root | wc -l) -eq 0 ];
then
  output_reco_file=`ls *_beam.root`
else
  output_reco_file=`ls *_reproc.root`
fi

echo "Output files:"
echo "\tReco: ${output_reco_file}"
#echo "\tHists: ${output_mr_file}"

echo "Forming reco metadata"
python -m meta_maker --start_time $starttime --end_time $endtime --file_format "artroot" \
                     --app_family "dunesw" --app_name "reco" --app_version ${DUNE_VERSION} \
                     --data_tier "full-reconstructed" --get_events -p "$did" \
                     --campaign "vd-protodune-det-reco" \
                     --fcl $FCL1 \
                     -f "${JUSTIN_SCOPE}:$output_reco_file" -j "${output_reco_file}.json"
if [ $? -ne 0 ]; then
  echo "Error in reco metadata"
  exit 1
fi
echo "Ran successfully"
cat ${output_reco_file}.json


#echo "Forming hist metadata"
#python -m meta_maker --start_time $starttime --end_time $endtime --file_format "root" \
#                     --app_family "dunesw" --app_name "reco" --app_version ${DUNE_VERSION} \
#                     --data_tier "root-tuple-virtual" -p "$did" \
#                     --campaign "hd-protodune-sim-reco" \
#                     --fcl $FCL1 \
#                     -f "${JUSTIN_SCOPE}:$output_mr_file" -j "${output_mr_file}.json"
# --parent_as_json \
#if [ $? -ne 0 ]; then
#  echo "Error in hist metadata"
#  exit 1
#fi
#echo "formed"
#cat ${output_mr_file}.json

echo "$pfn" > justin-processed-pfns.txt