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Workflow 1226, Stage 1

Priority50
Processors1
Wall seconds80000
Image/cvmfs/singularity.opensciencegrid.org/fermilab/fnal-wn-sl7:latest
RSS bytes4194304000 (4000 MiB)
Max distance for inputs3000.0
Enabled input RSEs CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, MONTECARLO, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled output RSEs CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled sites BR_CBPF, CA_SFU, CERN, CH_UNIBE-LHEP, CZ_FZU, ES_CIEMAT, ES_PIC, FR_CCIN2P3, IT_CNAF, NL_NIKHEF, NL_SURFsara, UK_Bristol, UK_Brunel, UK_Durham, UK_Edinburgh, UK_Glasgow, UK_Imperial, UK_Lancaster, UK_Liverpool, UK_Manchester, UK_Oxford, UK_QMUL, UK_RAL-PPD, UK_RAL-Tier1, UK_Sheffield, US_Colorado, US_FNAL-FermiGrid, US_FNAL-T1, US_Michigan, US_PuertoRico, US_SU-ITS, US_Swan, US_UChicago, US_UConn-HPC, US_UCSD, US_Wisconsin
Scopeusertests
Events for this stage

Output patterns

 DestinationPatternLifetimeFor next stageRSE expression
1https://fndcadoor.fnal.gov:2880/dune/scratch/users/ichong/fnal/01226/1*.root

Environment variables

NameValue
CODE_TAR_DIR_LOCAL/cvmfs/fifeuser3.opensciencegrid.org/sw/dune/1f8f8aaded68cc7c3e873196b083ca84b933f518
DUNE_QUALIFIERe26:prof
DUNE_VERSIONv10_04_06d00
FCL_FILE/cvmfs/fifeuser3.opensciencegrid.org/sw/dune/2c26877194d4beadcf740b3dad2c073037e0c822/atm-reco_truth_vtx.fcl
NUM_EVENTS10
XML_MASTER/cvmfs/fifeuser3.opensciencegrid.org/sw/dune/2c26877194d4beadcf740b3dad2c073037e0c822/PandoraSettings_Master_Atmos_Production.xml
XML_NEUTRINO/cvmfs/fifeuser3.opensciencegrid.org/sw/dune/2c26877194d4beadcf740b3dad2c073037e0c822/PandoraSettings_Neutrino_Atmos_Production.xml

File states

Total filesFindingUnallocatedAllocatedOutputtingProcessedNot foundFailed
100050049800101

Job states

TotalSubmittedStartedProcessingOutputtingFinishedNotusedAbortedStalledJobscript errorOutputting failedNone processed
628000010589112502
Files processed000.10.10.20.20.30.30.40.40.50.50.60.60.70.70.80.80.90.911Aug-16 18:00Aug-16 19:00Aug-16 20:00Files processedBin start timesNumber per binNL_SURFsara
Replicas per RSE500478.9740683383267198.05248553014766500327.1643184710031325.085019390492666280.67912919051514199.0220838006948756295.3432397097149171.3795326019263449314.0163894393887151.9375046846271946334.6768634524633138.9531521117436345356.7657911973895131.2952701122450815372.02701469795517129.002278570564338377.94061562230746128.72013993177558Replicas per RSEFNAL_DCACHE (38%)PRAGUE (38%)SURFSARA (5%)NIKHEF (4%)RAL_ECHO (3%)RAL-PP (3%)QMUL (3%)DUNE_FR_CCIN2P3_DISK (1%)DUNE_ES_PIC (0%)

RSEs used

NameInputsOutputs
PRAGUE1720
SURFSARA1090
RAL_ECHO920
RAL-PP880
QMUL760
NIKHEF730
DUNE_ES_PIC90
DUNE_FR_CCIN2P3_DISK70
None02

Stats of processed input files as CSV or JSON, and of uploaded output files as CSV or JSON (up to 10000 files included)

File reset events, by site

SiteAllocatedOutputting
UK_RAL-Tier12290
NL_SURFsara1100
UK_QMUL560
CERN550
UK_RAL-PPD510
NL_NIKHEF270
US_UChicago190
CZ_FZU170
US_FNAL-FermiGrid160
UK_Manchester140
US_Wisconsin30
UK_Edinburgh20
FR_CCIN2P310

Jobscript

#!/bin/bash
:<<'EOF'
This jobscript generates CaloHitList-based graph data 
from input reco2 ROOT files using your custom LArSoft setup.

Required environment variables:
  - FCL_FILE
  - CODE_TAR_DIR_LOCAL
  - DUNE_VERSION
  - DUNE_QUALIFIER
  - XML_MASTER
  - XML_NEUTRINO
  - NUM_EVENTS (optional)
  - FCL_SECONDARY (optional)
  - FCL_THIRD (optional)
EOF

# === Setup FCL and version info ===

DUNE_VERSION=${DUNE_VERSION:-v10_04_06d00}
DUNE_QUALIFIER=${DUNE_QUALIFIER:-e26:prof}

# === Number of events option ===
if [ -n "$NUM_EVENTS" ]; then
  events_option="-n $NUM_EVENTS"
fi

# === Get a file from justIN ===
did_pfn_rse=$($JUSTIN_PATH/justin-get-file)
if [ -z "$did_pfn_rse" ]; then
  echo "No file assigned. Exiting jobscript."
  exit 0
fi

# === Track input DID for MetaCat ===
echo "$did_pfn_rse" | cut -f1 -d' ' >> all-input-dids.txt

# === Parse PFN from DID ===
pfn=$(echo "$did_pfn_rse" | cut -d' ' -f2)
echo "Input PFN = $pfn"

# === Setup DUNE software ===
source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh
setup dunesw "$DUNE_VERSION" -q "$DUNE_QUALIFIER"

# === Mirror CODE_TAR_DIR_LOCAL ===
INPUT_TAR_DIR_LOCAL="$CODE_TAR_DIR_LOCAL"
echo "INPUT_TAR_DIR_LOCAL = $INPUT_TAR_DIR_LOCAL"

# === Setup custom code ===
if [ -n "$CODE_TAR_DIR_LOCAL" ]; then
  echo "Using local products from $CODE_TAR_DIR_LOCAL"
  source "$CODE_TAR_DIR_LOCAL/truth_vtx_larsoft/localProducts_larsoft_v10_04_06d00_e26_prof/setup-grid"
  mrbslp
fi

# === Generate common timestamp and random suffix for output renaming ===
timestamp=$(date -u +"%Y-%m-%dT_%H%M%SZ")
rand_suffix=$((1 + RANDOM % 10))

# === Output file naming ===
fname=$(basename "$pfn" .root)
outFile="$truthvtx_reco_${timestamp}.root"
logFile="${fname}_truthvtx_${timestamp}.log"

# === Set FW search path ===
XML_DIR_MASTER=$(dirname "$XML_MASTER")
XML_DIR_NEUTRINO=$(dirname "$XML_NEUTRINO")
export FW_SEARCH_PATH="$XML_DIR_MASTER:$XML_DIR_NEUTRINO:$FW_SEARCH_PATH"

# === Run lar (primary) ===
export LD_PRELOAD=${XROOTD_LIB}/libXrdPosixPreload.so
echo "Running LArSoft with FCL: $FCL_FILE"
lar -c "$FCL_FILE" $events_option -o "$outFile" -s"$pfn" > "$logFile" 2>&1
larExit=$?


###################run caf ###################

if [ -n "$FCL_SECONDARY" ]; then
  caf_timestamp=$(date -u +"%Y-%m-%dT_%H%M%SZ")
  secondary_out="caf_${fname}_truthvtx_${caf_timestamp}.root"
  secondary_log="caf_${fname}_truthvtx_${caf_timestamp}.log"
  echo "Running CAF step with FCL_SECONDARY: $FCL_SECONDARY using reco output: $outFile"
  lar -c "$FCL_SECONDARY" $events_option -o "$secondary_out" -s "$outFile" > "$secondary_log" 2>&1

  # === Rename CAF output root file to include timestamp if needed ===
  new_caf_out="caf_truthvtx_${caf_timestamp}_caf.root"
  mv caf.root "$new_caf_out"
  echo "Renamed caf.root -> $new_caf_out"

fi



# === Run lar (third) if needed ===
if [ -n "$FCL_THIRD" ]; then
  third_log="third_${logFile}"
  echo "Running LArSoft with third FCL: $FCL_THIRD"
  ana_out="anaout.root"
  lar -c "$FCL_THIRD" $events_option  -s "$outFile" -o "$ana_out"  --sam-data-tier=out:ana     --sam-stream-name=out:physics  > "$third_log" 2>&1
  anatree="anatree_truthvtx_${timestamp}.root"
  mv ana_tree_hd.root "$anatree"
  echo "Renamed ana_tree_hd.root -> $anatree"
fi





# === Show lar log tail ===
echo '=== Start last 100 lines of lar log file ==='
tail -100 "$logFile"
echo '=== End last 100 lines of lar log file ==='



# === Show lar log tail ===
echo '=== Start last 100 lines of lar log file ==='
tail -100 "$secondary_log"
echo '=== End last  100 lines of lar log file ==='

if [ -f "$third_log" ]; then
  echo '=== Start last 100 lines of third lar log file ==='
  tail -100 "$third_log"
  echo '=== End last 100 lines of third lar log file ==='
fi


# === Mark processed ===
if [ $larExit -eq 0 ]; then
  echo "$pfn" > justin-processed-pfns.txt
  jobscriptExit=0
else
  jobscriptExit=1
fi

# === Package logs ===
tar zcf "${JUSTIN_JOBSUB_ID//[@]/_}.logs.tgz" *.log

# === Display output summary ===
echo "=== Generated output files ==="
ls -1 *.* 2>/dev/null | grep -v 'all-input-dids.txt' || echo "No output files found."

exit $jobscriptExit
# === Package logs ===
tar zcf "${JUSTIN_JOBSUB_ID//[@]/_}.logs.tgz" *.log

# === Display output summary ===
echo "=== Generated output files ==="
ls -1 *.* 2>/dev/null | grep -v 'all-input-dids.txt' || echo "No output files found."

exit $jobscriptExit
justIN time: 2025-09-19 03:26:59 UTC       justIN version: 01.05.00