Workflow 12339, Stage 1

Workflow	12339
Campaign	699
Priority	50
Processors	1
Wall seconds	80000
Image	/cvmfs/singularity.opensciencegrid.org/fermilab/fnal-wn-sl7:latest
RSS bytes	2097152000 (2000 MiB)
Max distance for inputs	100.0
Enabled input RSEs	CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, MONTECARLO, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled output RSEs	CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled sites	BR_CBPF, CA_SFU, CA_Victoria, CERN, CH_UNIBE-LHEP, CZ_FZU, ES_CIEMAT, ES_PIC, FR_CCIN2P3, IT_CNAF, NL_NIKHEF, NL_SURFsara, UK_Bristol, UK_Brunel, UK_Durham, UK_Edinburgh, UK_Glasgow, UK_Imperial, UK_Lancaster, UK_Liverpool, UK_Manchester, UK_Oxford, UK_QMUL, UK_RAL-PPD, UK_RAL-Tier1, UK_Sheffield, US_BNL, US_Colorado, US_FNAL-FermiGrid, US_FNAL-T1, US_Michigan, US_NotreDame, US_PuertoRico, US_SU-ITS, US_Swan, US_UChicago, US_UConn-HPC, US_UCSD, US_Wisconsin
Scope	usertests
Events for this stage

Environment variables

Name	Value
OnGrid	1
SnakemakeDir	/cvmfs/fifeuser2.opensciencegrid.org/sw/dune/5ceb0ad019513e7844163148519a7653a0b24f06/

File states

Total files	Finding	Unallocated	Allocated	Outputting	Processed	Not found	Failed
1	0	1	0	0	0	0	0

Job states

Total	Submitted	Started	Processing	Outputting	Finished	Notused	Aborted	Stalled	Jobscript error	Outputting failed	None processed
4	0	0	0	0	1	2	0	0	0	0	1

RSEs used

Name	Inputs	Outputs
MONTECARLO	1	0

Stats of processed input files as CSV or JSON, and of uploaded output files as CSV or JSON (up to 10000 files included)

Jobscript

#!/bin/bash
#

# if [ -z ${JUSTIN_PROCESSORS} ]; then
#   JUSTIN_PROCESSORS=1
# fi

# echo "Justin processors: ${JUSTIN_PROCESSORS}"

# export TF_NUM_THREADS=${JUSTIN_PROCESSORS}   
# export OPENBLAS_NUM_THREADS=${JUSTIN_PROCESSORS} 
# export JULIA_NUM_THREADS=${JUSTIN_PROCESSORS} 
# export MKL_NUM_THREADS=${JUSTIN_PROCESSORS} 
# export NUMEXPR_NUM_THREADS=${JUSTIN_PROCESSORS} 
# export OMP_NUM_THREADS=${JUSTIN_PROCESSORS}  
  
echo "Will use justin-get-file"
DID_PFN_RSE=`$JUSTIN_PATH/justin-get-file`
if [ "${DID_PFN_RSE}" == "" ] ; then
  echo "Could not get file"
  exit 0
fi
echo $DID_PFN_RSE

source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh
setup python v3_9_15

if [ -z ${OnGrid} ]; then
  source /exp/dune/data/users/calcuttj/snakemake_venv/bin/activate
else
  pip install --user snakemake 'pulp<2.8'
fi


python -m snakemake --cores 1 --config nfiles=${SnakemakeNFiles:-1} \
  --snakefile ${SnakemakeDir}/workflow/Snakefile \
  all


echo "Done running snakemake"

# did=$(echo ${DID_PFN_RSE} | cut -f1 -d' ')
# echo $did > justin-processed-dids.txt