Workflow 12502, Stage 1

Workflow	12502
Campaign	849
Priority	50
Processors	1
Wall seconds	80000
Image	/cvmfs/singularity.opensciencegrid.org/fermilab/fnal-wn-sl7:latest
RSS bytes	5241831424 (4999 MiB)
Max distance for inputs	100.0
Enabled input RSEs	CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, MONTECARLO, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled output RSEs	CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled sites	BR_CBPF, CA_SFU, CA_Victoria, CERN, CH_UNIBE-LHEP, CZ_FZU, ES_CIEMAT, ES_PIC, FR_CCIN2P3, IT_CNAF, NL_NIKHEF, NL_SURFsara, UK_Bristol, UK_Brunel, UK_Durham, UK_Edinburgh, UK_Glasgow, UK_Imperial, UK_Lancaster, UK_Liverpool, UK_Manchester, UK_Oxford, UK_QMUL, UK_RAL-PPD, UK_RAL-Tier1, UK_Sheffield, US_BNL, US_Colorado, US_FNAL-FermiGrid, US_FNAL-T1, US_Michigan, US_NotreDame, US_PuertoRico, US_SU-ITS, US_Swan, US_UChicago, US_UConn-HPC, US_UCSD, US_Wisconsin
Scope	usertests
Events for this stage

Output patterns

	Destination	Pattern	Lifetime	For next stage	RSE expression
1	https://fndcadoor.fnal.gov:2880/dune/scratch/users/jjo/fnal/12502/1	out_*.tgz

Environment variables

Name	Value
INPUT_TAR_DIR_LOCAL	/cvmfs/fifeuser4.opensciencegrid.org/sw/dune/052d43a26e9fd1b52dc226f18c4daf77c376f535
NUM_EVENTS	10

File states

Total files	Finding	Unallocated	Allocated	Outputting	Processed	Not found	Failed
100	0	0	0	0	100	0	0

Job states

Total	Submitted	Started	Processing	Outputting	Finished	Notused	Aborted	Stalled	Jobscript error	Outputting failed	None processed
178	0	0	0	0	160	0	0	16	2	0	0

RSEs used

Name	Inputs	Outputs
MONTECARLO	118	0
None	0	100

Stats of processed input files as CSV or JSON, and of uploaded output files as CSV or JSON (up to 10000 files included)

File reset events, by site

Site	Allocated	Outputting
CA_SFU	8	0
UK_QMUL	2	0
UK_Manchester	2	0
US_UChicago	2	0
NL_SURFsara	1	0
UK_RAL-Tier1	1	0

Jobscript

#!/bin/bash
#
# fdhd_test.jobscript
# Simple testing jobscript to run a short FD-HD chain
#

# ---- Setup environment ----
source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh

# Use requested version and qualifier
setup dunesw v10_16_00d00 -q e26:prof
if [ $? -ne 0 ]; then
  echo "Error setting up dunesw v10_16_00d00"
  exit 1
fi

# Prefer uploaded FHiCLs and WireCell configs if provided
if [ -n "${INPUT_TAR_DIR_LOCAL:-}" ]; then
    # Tell art/lar where to find .fcl files
    export FW_SEARCH_PATH="${INPUT_TAR_DIR_LOCAL}/cffm-if/dune10kt-1x2x6:${FW_SEARCH_PATH}"
    export FCL_SEARCH_PATH="${INPUT_TAR_DIR_LOCAL}/cffm-if/dune10kt-1x2x6:${FCL_SEARCH_PATH}"
    export FHICL_FILE_PATH="${INPUT_TAR_DIR_LOCAL}/cffm-if/dune10kt-1x2x6:${FHICL_FILE_PATH}"

    # WireCell lookup
    export WIRECELL_PATH="${INPUT_TAR_DIR_LOCAL}/cffm-if/dune10kt-1x2x6:${WIRECELL_PATH}"
fi

echo "FW_SEARCH_PATH=${FW_SEARCH_PATH}"
echo "FCL_SEARCH_PATH=${FCL_SEARCH_PATH}"
echo "FHICL_FILE_PATH=${FHICL_FILE_PATH}"
echo "WIRECELL_PATH=${WIRECELL_PATH}"

# Parallelism
if [ -z "${JUSTIN_PROCESSORS}" ]; then
  JUSTIN_PROCESSORS=1
fi
export TF_NUM_THREADS=${JUSTIN_PROCESSORS}
export OPENBLAS_NUM_THREADS=${JUSTIN_PROCESSORS}
export JULIA_NUM_THREADS=${JUSTIN_PROCESSORS}
export MKL_NUM_THREADS=${JUSTIN_PROCESSORS}
export NUMEXPR_NUM_THREADS=${JUSTIN_PROCESSORS}
export OMP_NUM_THREADS=${JUSTIN_PROCESSORS}

# ---- Get one input file (MC counter or real file, depending on submission) ----
did_pfn_rse="$($JUSTIN_PATH/justin-get-file)"
if [ -z "${did_pfn_rse}" ] ; then
  echo "No unprocessed files available, exiting."
  exit 0
fi

did=$(echo "$did_pfn_rse" | cut -f1 -d' ')
pfn=$(echo "$did_pfn_rse" | cut -f2 -d' ')
rse=$(echo "$did_pfn_rse" | cut -f3 -d' ')
name_only=$(echo "$did" | cut -f2 -d':' )

echo "Processing file: ${pfn}"
echo "RSE: ${rse}"
echo "DID: ${did}"

# ---- Set event count ----
nevents="${NUM_EVENTS:-10}"

# ---- Timestamp for unique output names ----
now=$(date -u +"%Y%m%dT%H%M%SZ")
jobid=$(echo "${JUSTIN_JOBSUB_ID:-1}" | cut -f1 -d'@' | sed -e "s/\./_/")
stageid=${JUSTIN_STAGE_ID:-1}

# ---- LArSoft chain ----

# 1. GEN (pure MC)
echo "Running: GEN stage ..."
ls -lh
lar -n "${nevents}" -c gen_genie.fcl -o gen.root
if [ $? -ne 0 ]; then echo "GEN failed"; exit 1; fi

# 2. G4
echo "Running: G4 stage ..."
ls -lh
lar -c g4.fcl -s gen.root -o g4.root
if [ $? -ne 0 ]; then echo "G4 failed"; exit 1; fi

# 3. WireCell Sim SP
echo "Running: WC SIM SP stage ..."
ls -lh
label_tag="${name_only}_${jobid}_${stageid}_${now}"
outdir="out_${label_tag}"
mkdir -p "${outdir}"

lar -c wcls_sim_sp.fcl -s g4.root -o sp.root
if [ $? -ne 0 ]; then echo "WCLS failed"; exit 1; fi

# 4. Truth labelling
echo "Running: True labelling stage ..."
ls -lh
truthdir="truth_${label_tag}"
mkdir -p "${truthdir}"
pushd "${truthdir}"

lar -c wcls-labelling2d_sep.fcl -s "../sp.root"
rc=$?
if [ $rc -ne 0 ]; then
  echo "Truth labeling failed"
  popd
  exit 1
fi

echo "Truth dir contents after lar:"
ls -lh

shopt -s nullglob
for f in pixeldata-anode*.h5; do
  mv -v "$f" "../${outdir}/${label_tag}_${f}"
done
shopt -u nullglob

popd

echo "Per-job output directory contents:"
ls -lh "${outdir}" || true

# ---- Package per-job outputs into a tarball for stage-out ----
tarball="${outdir}.tgz"

echo "Creating tarball ${tarball} from ${outdir}"
tar -czf "${tarball}" "${outdir}"

echo "Tarball contents:"
tar -tzf "${tarball}"

ls -lh "${tarball}"

# ---- Mark as processed ----
echo "${pfn}" > justin-processed-pfns.txt

echo "Job completed successfully."

exit 0