Stats of processed input files as CSV or JSON, and of uploaded output files as CSV or JSON (up to 10000 files included)
File reset events, by site
Site
Allocated
Outputting
US_FNAL-FermiGrid
5
0
Jobscript
#!/bin/bash
:<<'EOF'
To use this jobscript to process 5 files from the dataset fardet-hd__fd_mc_2023a_reco2__full-reconstructed__v09_81_00d02__standard_reco2_dune10kt_nu_1x2x6__prodgenie_nu_dune10kt_1x2x6__out1__validation
data and put the output logs in the `usertests` namespace and saves the output in /scratch
Use these commands to set up ahead of time:
export DUNE_VERSION=<dune version>
export DUNE_QUALIFIER=<dune qualifier>
export FCL_FILE=<top level fcl>
export INPUT_TAR_DIR_LOCAL=<cvmfs directory returned by cvmfs>
export MQL=<your file query>
export DIRECTORY=<directory name inside the tar file>
Use this command to create the workflow:
justin simple-workflow \
--mql "$MQL" \
--jobscript submit_local_code.jobscript.sh --rss-mb 4000 \
--output-pattern "*.root:${FNALURL}/${USERF}" --env PROCESS_TYPE=${PROCESS_TYPE} --env DIRECTORY=${DIRECTORY} --scope usertests --lifetime 30
The following optional environment variables can be set when creating the
workflow/stage: FCL_FILE, PROCESS_TYPE, NUM_EVENTS, DUNE_VERSION, DUNE_QUALIFIER
EOF
# fcl file and DUNE software version/qualifier to be used
FCL_FILE=${FCL_FILE:-${INPUT_TAR_DIR_LOCAL}/${DIRECTORY}/my_code/fcls/my_reco.fcl}
PROCESS_TYPE=${PROCESS_TYPE:-reco2}
#DUNE_VERSION=${DUNE_VERSION:-v09_85_00d00}
#DUNE_QUALIFIER=${DUNE_QUALIFIER:-e26:prof}
echo "Check environment"
echo "DIRECTORY=$DIRECTORY"
echo "DUNE_VERSION=$DUNE_VERSION"
echo "DUNE_QUALIFIER=$DUNE_QUALIFIER"
echo "FCL_FILE=$FCL_FILE"
echo "MQL=$MQL"
echo "PROCESS_TYPE=$PROCESS_TYPE"
echo "USERF=$USERF"
echo "NUM_EVENTS=$NUM_EVENTS"
echo "INPUT_TAR_DIR_LOCAL=$INPUT_TAR_DIR_LOCAL"
echo "Current working directory is `pwd`"
# number of events to process from the input file
if [ "$NUM_EVENTS" != "" ] ; then
events_option="-n $NUM_EVENTS"
fi
# First get an unprocessed file from this stage
did_pfn_rse=`$JUSTIN_PATH/justin-get-file`
if [ "$did_pfn_rse" = "" ] ; then
echo "Nothing to process - exit jobscript"
exit 0
fi
# Keep a record of all input DIDs, for pdjson2meta file -> DID mapping
echo "$did_pfn_rse" | cut -f1 -d' ' >>all-input-dids.txt
# pfn is also needed when creating justin-processed-pfns.txt
pfn=`echo $did_pfn_rse | cut -f2 -d' '`
echo "Input PFN = $pfn"
echo "TARDIR ${INPUT_TAR_DIR_LOCAL}"
echo "CODE DIR ${DIRECTORY}"
# Setup DUNE environment
localProductsdir=`ls -c1d ${INPUT_TAR_DIR_LOCAL}/${DIRECTORY}/localProducts*`
echo "localProductsdir ${localProductsdir}"
# seems to require the right name for the setup script
echo " check that there is a setup in ${localProductsdir}"
ls -lrt ${localProductsdir}/setup
ls -lrt ${INPUT_TAR_DIR_LOCAL}/${DIRECTORY}/$FCL_FILE
source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh
export PRODUCTS="${localProductsdir}/:$PRODUCTS"
# Then we can set up our local products
setup duneana "$DUNE_VERSION" -q "$DUNE_QUALIFIER"
setup dunesw "$DUNE_VERSION" -q "$DUNE_QUALIFIER"
source ${localProductsdir}/setup
mrbslp
# Construct outFile from input $pfn
now=$(date -u +"%Y-%m-%dT_%H%M%SZ")
Ffname=`echo $pfn | awk -F/ '{print $NF}'`
fname=`echo $Ffname | awk -F. '{print $1}'`
outFile=${fname}_${PROCESS_TYPE}_${now}.root
campaign="justIN.w${JUSTIN_WORKFLOW_ID}s${JUSTIN_STAGE_ID}"
# Here is where the LArSoft command is call it
(
# Do the scary preload stuff in a subshell!
export LD_PRELOAD=${XROOTD_LIB}/libXrdPosixPreload.so
echo "$LD_PRELOAD"
echo "now run lar"
lar -c ${INPUT_TAR_DIR_LOCAL}/${DIRECTORY}/$FCL_FILE $events_option -o $outFile "$pfn" > ${fname}_${PROCESS_TYPE}_${now}.log 2>&1
)
echo '=== Start last 1000 lines of lar log file ==='
tail -1000 ${fname}_${PROCESS_TYPE}_${now}.log
echo '=== End last 1000 lines of lar log file ==='
# Subshell exits with exit code of last command
larExit=$?
echo "lar exit code $larExit"
if [ $larExit -eq 0 ] ; then
# Success !
echo "$pfn" > justin-processed-pfns.txt
jobscriptExit=0
else
# Oh !
jobscriptExit=1
fi
# Create compressed tar file with all log files
tar zcf `echo "$JUSTIN_JOBSUB_ID.logs.tgz" | sed 's/@/_/g'` *.log
exit $jobscriptExit
justIN time: 2026-02-04 10:27:34 UTC justIN version: 01.06.00
