Workflow 12690, Stage 1

Workflow	12690
Campaign	1023
Priority	50
Processors	4
Wall seconds	80000
Image	/cvmfs/singularity.opensciencegrid.org/fermilab/fnal-wn-sl7:latest
RSS bytes	6815744000 (6500 MiB)
Max distance for inputs	30.0
Enabled input RSEs	CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, MONTECARLO, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled output RSEs	CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled sites	BR_CBPF, CA_SFU, CA_Victoria, CERN, CH_UNIBE-LHEP, CZ_FZU, ES_CIEMAT, ES_PIC, FR_CCIN2P3, IT_CNAF, NL_NIKHEF, NL_SURFsara, UK_Bristol, UK_Brunel, UK_Durham, UK_Edinburgh, UK_Glasgow, UK_Imperial, UK_Lancaster, UK_Liverpool, UK_Manchester, UK_Oxford, UK_QMUL, UK_RAL-PPD, UK_RAL-Tier1, UK_Sheffield, US_BNL, US_Colorado, US_FNAL-FermiGrid, US_FNAL-T1, US_Michigan, US_NotreDame, US_PuertoRico, US_SU-ITS, US_Swan, US_UChicago, US_UConn-HPC, US_UCSD, US_Wisconsin
Scope	usertests
Events for this stage

Output patterns

	Destination	Pattern	Lifetime	For next stage	RSE expression
1	Rucio usertests:usertests-fnal-w12690s1p1	*.root	7776000	False

Environment variables

Name	Value
FHICL_TAR	/cvmfs/fifeuser2.opensciencegrid.org/sw/dune/9bce52b1ac1261057869b0044843c4097848bc24
INPUT_TAR_DIR_LOCAL	/cvmfs/fifeuser1.opensciencegrid.org/sw/dune/9adf2d45be95eb433b5250fdb8f47a5cfaa99b6e
METADATA_DIR	/cvmfs/fifeuser2.opensciencegrid.org/sw/dune/273045f43d7c86de1848a0b2b33e0d614d73cf83

Condor Class Ads

Name	Value
HAS_CVMFS_dune_osgstorage_org	true

File states

Total files	Finding	Unallocated	Allocated	Outputting	Processed	Not found	Failed
2	0	0	0	0	2	0	0

Job states

Total	Submitted	Started	Processing	Outputting	Finished	Notused	Aborted	Stalled	Jobscript error	Outputting failed	None processed
7	0	0	0	0	6	0	0	0	0	1	0

RSEs used

Name	Inputs	Outputs
DUNE_US_FNAL_DISK_STAGE	3	2

Stats of processed input files as CSV or JSON, and of uploaded output files as CSV or JSON (up to 10000 files included)

File reset events, by site

Site	Allocated	Outputting
US_FNAL-FermiGrid	0	1

Jobscript

#!/bin/bash
#

source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh
setup metacat
export METACAT_SERVER_URL=https://metacat.fnal.gov:9443/dune_meta_prod/app
export METACAT_AUTH_SERVER_URL=https://metacat.fnal.gov:8143/auth/dune

if [ -n "${METADATA_DIR}" ]; then
  stat ${METADATA_DIR}
  if [ $? -ne 0 ]; then
    echo "failed to stat metadata dir"
  fi

  echo "metadata dir contents:"
  ls $METADATA_DIR
  PYTHONPATH=${METADATA_DIR}:$PYTHONPATH
fi

if [ -n "${DUNESW_DIR}" ]; then
  stat ${DUNESW_DIR}
  if [ $? -ne 0 ]; then
    echo "failed to stat dunesw dir"
    exit 1
  fi

  export PRODUCTS=$DUNESW_DIR:$PRODUCTS
fi


export PRODUCTS=$INPUT_TAR_DIR_LOCAL:${PRODUCTS}

echo "PRODUCTS $PRODUCTS"

DUNE_TAG=v10_16_00d00
#Setup recent lar software suite
DUNE_VERSION=${DUNE_VERSION:-${DUNE_TAG}}
setup dunesw \
   "${DUNE_VERSION}" \
   -q "${DUNE_QUALIFIER:-e26:prof}"

if [ $? -ne 0 ]; then
  echo "Failed to setup dunesw $DUNE_VERSION $DUNE_QUALIFIER"
  exit 1
fi

export PROTODUNEANA_DIR=${INPUT_TAR_DIR_LOCAL}/protoduneana/${DUNE_VERSION}
export PROTODUNEANA_INC=${PROTODUNEANA_DIR}/include
export PROTODUNEANA_FQ_DIR=${PROTODUNEANA_DIR}/slf7.x86_64.e26.prof
export PROTODUNEANA_LIB=${PROTODUNEANA_FQ_DIR}/lib

export CET_PLUGIN_PATH=$PROTODUNEANA_LIB:$CET_PLUGIN_PATH

export FHICL_FILE_PATH=${PROTODUNEANA_DIR}/fcl:${FHICL_FILE_PATH}
export FHICL_FILE_PATH=${INPUT_TAR_DIR_LOCAL}:${FHICL_FILE_PATH}
export FHICL_FILE_PATH=${FHICL_TAR}:${FHICL_FILE_PATH}

export FW_SEARCH_PATH=${INPUT_TAR_DIR_LOCAL}:$FW_SEARCH_PATH
export FW_SEARCH_PATH=${FHICL_TAR}:$FW_SEARCH_PATH

echo "FHICL_FILE_PATH: ${FHICL_FILE_PATH}"

if [ -n "${USE_INPUT_FCL}" ]; then
  
  if [ -z ${INPUT_DIR} ]; then
    echo "Error, INPUT_DIR is undefined but user requested USE_INPUT_FCL"
    exit 1
  fi

  stat ${INPUT_DIR}
  if [ $? -ne 0 ]; then
    echo "Failed to stat input dir. Exiting safely"
    exit 0
  fi

  FHICL_FILE_PATH=${INPUT_DIR}:${FHICL_FILE_PATH}
  echo "FCL PATH: $FHICL_FILE_PATH"
fi

if [ -n "${METADATA_DIR}" ]; then
  stat ${METADATA_DIR}
  if [ $? -ne 0 ]; then
    echo "failed to stat metadata dir"
  fi

  echo "metadata dir contents:"
  ls $METADATA_DIR
  PYTHONPATH=${METADATA_DIR}:$PYTHONPATH
fi

# Temporary fix to get the propoer PDS map
export FHICL_FILE_PATH=${METADATA_DIR}:${FHICL_FILE_PATH}
export FW_SEARCH_PATH=${METADATA_DIR}:${FW_SEARCH_PATH}

FCL1=${FCL1:-"pdvd_MichelAnalysis_perso.fcl"}
echo "FCL1 dump:" ${FCL1}
fhicl-dump ${FCL1}
if [ $? -ne 0 ]; then
  echo "fhicl-dump ${FCL1} failed"
  exit 1
fi

echo "DUNESW loc:"
ups active | grep dunesw

if [ -z ${JUSTIN_PROCESSORS} ]; then
  JUSTIN_PROCESSORS=1
fi

echo "Justin processors: ${JUSTIN_PROCESSORS}"

export TF_NUM_THREADS=${JUSTIN_PROCESSORS}   
export OPENBLAS_NUM_THREADS=${JUSTIN_PROCESSORS} 
export JULIA_NUM_THREADS=${JUSTIN_PROCESSORS} 
export MKL_NUM_THREADS=${JUSTIN_PROCESSORS} 
export NUMEXPR_NUM_THREADS=${JUSTIN_PROCESSORS} 
export OMP_NUM_THREADS=${JUSTIN_PROCESSORS}  

echo "printing env"
env

echo "Will use justin-get-file"
#
DID_PFN_RSE=`$JUSTIN_PATH/justin-get-file`
##Check that any file was returned
if [ "${DID_PFN_RSE}" == "" ] ; then
  echo "Could not get file"
  exit 0
fi

pfn=`echo ${DID_PFN_RSE} | cut -f2 -d' '`
did=`echo ${DID_PFN_RSE} | cut -f1 -d' '`
echo "pfn: ${pfn}"
echo "did: ${did}"
now=$(date -u +"%Y%m%dT%H%M%SZ")

nevents=${NEVENTS:--1}
nevents=-1

extra_line=""
if [ -n "${SKIPFCL2}" ]; then
  jobsub_id=`echo ${JUSTIN_JOBSUB_ID:-1.1@1} | cut -f1 -d'@' | sed -e"s/\./_/"`
fi

output_file=$(basename ${pfn%.*})_${now}_pdvd_michel_analysis.root
echo "output_file: $output_file"

echo "Running reco stage1"
touch reco.log
starttime=`date +"%s"`.0
lar -c ${FCL1} \
    -n ${nevents} \
    -T ${output_file} \
    ${pfn} #>reco.log 2>&1
larExit=$?
endtime=`date +"%s"`.0

if [ $larExit -ne 0 ]; then
  echo "Error in reco1"
  cat reco.log
  exit $larExit
fi

output_reco_file=`ls *.root`

echo "Output files:"
echo "\tReco: ${output_reco_file}"

echo "Forming reco metadata"
python -m meta_maker --start_time $starttime --end_time $endtime --file_format "root" \
                     --app_family "dunesw" --app_name "reco" --app_version ${DUNE_VERSION} \
                     --data_tier "root-tuple-virtual"\
                     --campaign "pdvd_cosmics_michel" \
                     --fcl $FCL1 \
                     -f "${JUSTIN_SCOPE}:$output_reco_file" -j "${output_reco_file}.json"
if [ $? -ne 0 ]; then
  echo "Error in reco metadata"
  exit 1
fi
echo "Ran successfully"
## TODO -- CHECK
cat ${output_reco_file}.json

echo "$pfn" > justin-processed-pfns.txt