Workflow 12723, Stage 1

Workflow	12723
Campaign	1054
Priority	50
Processors	1
Wall seconds	80000
Image	/cvmfs/singularity.opensciencegrid.org/fermilab/fnal-wn-sl7:latest
RSS bytes	2097152000 (2000 MiB)
Max distance for inputs	0.0
Enabled input RSEs	CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, MONTECARLO, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled output RSEs	CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled sites	BR_CBPF, CA_SFU, CA_Victoria, CERN, CH_UNIBE-LHEP, CZ_FZU, ES_CIEMAT, ES_PIC, FR_CCIN2P3, IT_CNAF, NL_NIKHEF, NL_SURFsara, UK_Bristol, UK_Brunel, UK_Durham, UK_Edinburgh, UK_Glasgow, UK_Imperial, UK_Lancaster, UK_Liverpool, UK_Manchester, UK_Oxford, UK_QMUL, UK_RAL-PPD, UK_RAL-Tier1, UK_Sheffield, US_BNL, US_Colorado, US_FNAL-FermiGrid, US_FNAL-T1, US_Michigan, US_NotreDame, US_PuertoRico, US_SU-ITS, US_Swan, US_UChicago, US_UConn-HPC, US_UCSD, US_Wisconsin
Scope	usertests
Events for this stage

Environment variables

Name	Value
OnGrid	1
SnakemakeDir	/cvmfs/fifeuser1.opensciencegrid.org/sw/dune/6296b98065919dadeffdc58ac6f151954035543f/
UserWorkflow	user_workflows/Lardon.smk

File states

Total files	Finding	Unallocated	Allocated	Outputting	Processed	Not found	Failed
10	0	8	0	0	0	0	2

Job states

Total	Submitted	Started	Processing	Outputting	Finished	Notused	Aborted	Stalled	Jobscript error	Outputting failed	None processed
26	0	0	0	0	0	11	0	1	0	0	14

RSEs used

Name	Inputs	Outputs
DUNE_CERN_EOS	14	0

Stats of processed input files as CSV or JSON, and of uploaded output files as CSV or JSON (up to 10000 files included)

Jobscript

#!/bin/bash
source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh
setup python v3_9_15

if [ -z ${OnGrid} ]; then
  source /exp/dune/data/users/calcuttj/snakemake_venv/bin/activate
else
  setup gcc v12_1_0
  echo "Pip installing snakemake"
  # python -m venv snakemake_venv
  # source snakemake_venv/bin/activate
  # echo $VIRTUAL_ENV
  pip install -q --user snakemake 'pulp<2.8'
  python -m snakemake --version
fi

Snakefile=${Snakefile:-"workflow/Snakefile"}
echo $Snakefile

if [ -z ${SnakemakeUseApptainer} ]; then
  SnakemakeApptainerFlag=""
else
  SnakemakeApptainerFlag="--use-singularity --singularity-args=\"--cleanenv\""
  echo "Will use singularity"
fi

python -m snakemake -q --cores 1 \
  ${SnakemakeApptainerFlag} \
  --config nfiles=${SnakemakeNFiles:-1} \
  --config UserWorkflow=${UserWorkflow:-"ToInclude.smk"} \
  --snakefile ${SnakemakeDir}/${Snakefile} \
  all


echo "Done running snakemake"

# did=$(echo ${DID_PFN_RSE} | cut -f1 -d' ')
# echo $did > justin-processed-dids.txt