Workflow 1276, Stage 1

Priority	50
Processors	1
Wall seconds	80000
Image	/cvmfs/singularity.opensciencegrid.org/fermilab/fnal-wn-sl7:latest
RSS bytes	2097152000 (2000 MiB)
Max distance for inputs	0.0
Enabled input RSEs	CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, MONTECARLO, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled output RSEs	CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled sites	BR_CBPF, CA_SFU, CERN, CH_UNIBE-LHEP, CZ_FZU, ES_CIEMAT, ES_PIC, FR_CCIN2P3, IT_CNAF, NL_NIKHEF, NL_SURFsara, UK_Bristol, UK_Brunel, UK_Durham, UK_Edinburgh, UK_Glasgow, UK_Imperial, UK_Lancaster, UK_Liverpool, UK_Manchester, UK_Oxford, UK_QMUL, UK_RAL-PPD, UK_RAL-Tier1, UK_Sheffield, US_Colorado, US_FNAL-FermiGrid, US_FNAL-T1, US_Michigan, US_PuertoRico, US_SU-ITS, US_Swan, US_UChicago, US_UConn-HPC, US_UCSD, US_Wisconsin
Scope	usertests
Events for this stage

Output patterns

	Destination	Pattern	Lifetime	For next stage	RSE expression
1	https://fndcadoor.fnal.gov:2880/dune/scratch/users/ayankele/fnal/01276/1	eco.root

Environment variables

Name	Value
INPUT_TAR_DIR_LOCAL	/cvmfs/fifeuser4.opensciencegrid.org/sw/dune/7610af3dffce908cd92377912a9d2dbbc399c94f

File states

Total files	Finding	Unallocated	Allocated	Outputting	Processed	Not found	Failed
1000	0	0	0	0	1000	0	0

Job states

Total	Submitted	Started	Processing	Outputting	Finished	Notused	Aborted	Stalled	Jobscript error	Outputting failed	None processed
1753	0	0	0	0	1750	0	0	3	0	0	0

RSEs used

Name	Inputs	Outputs
PRAGUE	441	0
NIKHEF	126	0
RAL_ECHO	115	0
QMUL	94	0
SURFSARA	93	0
RAL-PP	85	0
DUNE_FR_CCIN2P3_DISK	32	0
DUNE_ES_PIC	17	0
None	0	974

Stats of processed input files as CSV or JSON, and of uploaded output files as CSV or JSON (up to 10000 files included)

File reset events, by site

Site	Allocated	Outputting
NL_NIKHEF	3	0

Jobscript

#!/bin/bash
:<<'EOF'

To use this jobscript to process 5 files from the dataset fardet-hd__fd_mc_2023a_reco2__full-reconstructed__v09_81_00d02__standard_reco2_dune10kt_nu_1x2x6__prodgenie_nu_dune10kt_1x2x6__out1__validation
data and put the output in the $USER namespace (MetaCat) and saves the output in /scratch
Use this command to create the workflow:

justin simple-workflow \
--mql \
"files from fardet-hd:fardet-hd__fd_mc_2023a__hit-reconstructed__v09_78_01d01__standard_reco1_dune10kt_1x2x6__prodgenie_nu_dune10kt_1x2x6__out1__v1_official limit 5  ordered"\
--jobscript submit_ana.jobscript --rss-mb 4000 \
--scope higuera --output-pattern '*_myreco2_*.root:$FNALURL/$USERF' 

The following optional environment variables can be set when creating the
workflow/stage: FCL_FILE, NUM_EVENTS, DUNE_VERSION, DUNE_QUALIFIER 

EOF

# fcl file and DUNE software version/qualifier to be used
FCL_FILE=${FCL_FILE:-$INPUT_TAR_DIR_LOCAL/recoenergys.fcl}
DUNE_VERSION=${DUNE_VERSION:-v10_03_01d00}
DUNE_QUALIFIER=${DUNE_QUALIFIER:-e26:prof}

# number of events to process from the input file
if [ "$NUM_EVENTS" != "" ] ; then
 events_option="-n $NUM_EVENTS"
fi

# First get an unprocessed file from this stage
#did_pfn_rse=`$JUSTIN_PATH/justin-get-file`

#if [ "$did_pfn_rse" = "" ] ; then
#  echo "Nothing to process - exit jobscript"
#  exit 0
#fi

# Keep a record of all input DIDs, for pdjson2meta file -> DID mapping
#echo "$did_pfn_rse" | cut -f1 -d' ' >>all-input-dids.txt

# pfn is also needed when creating justin-processed-pfns.txt
#pfn=`echo $did_pfn_rse | cut -f2 -d' '`
#echo "Input PFN = $pfn"

# Setup DUNE environment
source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh
export PRODUCTS="${INPUT_TAR_DIR_LOCAL}/localProducts_larsoft_v10_03_01_e26_prof/:$PRODUCTS"
# Then we can set up our local products
setup duneana "$DUNE_VERSION" -q "$DUNE_QUALIFIER"
setup dunesw "$DUNE_VERSION" -q "$DUNE_QUALIFIER"

campaign="justIN.w${JUSTIN_WORKFLOW_ID}s${JUSTIN_STAGE_ID}"

for nf in {1..15}; do  
    DID_PFN_RSE=$($JUSTIN_PATH/justin-get-file)

    # Check that any file was returned
    if [ "${DID_PFN_RSE}" == "" ]; then
        echo "Could not get file"
        # exit 0
        continue
    fi

    pfn=$(echo ${DID_PFN_RSE} | cut -f2 -d' ')
    DID=$(echo ${DID_PFN_RSE} | cut -f1 -d' ')
    
    echo ${DID} >> did.list
    echo ${pfn} >> file.list

    # Construct outFile from input $pfn 
    now=$(date -u +"%Y-%m-%dT_%H%M%SZ")
    Ffname=`echo $pfn | awk -F/ '{print $NF}'`
    fname=`echo $Ffname | awk -F. '{print $1}'`
    outFile=${fname}_reco2_${now}.root

    # Here is where the LArSoft command is call it 
    (
    # Do the scary preload stuff in a subshell!
    export LD_PRELOAD=${XROOTD_LIB}/libXrdPosixPreload.so
    echo "$LD_PRELOAD"

    source ${INPUT_TAR_DIR_LOCAL}/localProducts_larsoft_v10_03_01_e26_prof/setup-grid
    mrbslp
    ln -s ${INPUT_TAR_DIR_LOCAL}/build_slf7.x86_64/dunereco/fcl/* .
    export CET_PLUGIN_PATH=${INPUT_TAR_DIR_LOCAL}/build_slf7.x86_64/dunereco/slf7.x86_64.e26.prof/lib:${CET_PLUGIN_PATH}
    
    lar -c $FCL_FILE $events_option -s ${pfn} > ${fname}_ana_${now}.log 2>&1
    )
 
    echo '=== Start last 20 lines of lar log file ==='
    tail -20 ${fname}_ana_${now}.log
    echo '=== End last 20 lines of lar log file ==='

    # Subshell exits with exit code of last command
    larExit=$?
    echo "lar exit code $larExit"

    if [ $larExit -eq 0 ] ; then
      # Success !
      echo "$pfn" &>> justin-processed-pfns.txt
      jobscriptExit=0
    fi
done

# Create compressed tar file with all log files 
tar zcf `echo "$JUSTIN_JOBSUB_ID.logs.tgz" | sed 's/@/_/g'` *.log
exit $jobscriptExit