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Workflow 147, Stage 1

Priority50
Processors1
Wall seconds36000
Image/cvmfs/singularity.opensciencegrid.org/fermilab/fnal-wn-sl7:latest
RSS bytes4194304000 (4000 MiB)
Max distance for inputs30.0
Enabled input RSEs CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, MONTECARLO, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled output RSEs CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled sites BR_CBPF, CA_SFU, CERN, CH_UNIBE-LHEP, CZ_FZU, ES_CIEMAT, ES_PIC, FR_CCIN2P3, IT_CNAF, NL_NIKHEF, NL_SURFsara, UK_Bristol, UK_Brunel, UK_Durham, UK_Edinburgh, UK_Glasgow, UK_Imperial, UK_Lancaster, UK_Liverpool, UK_Manchester, UK_Oxford, UK_QMUL, UK_RAL-PPD, UK_RAL-Tier1, UK_Sheffield, US_Colorado, US_FNAL-FermiGrid, US_FNAL-T1, US_Michigan, US_PuertoRico, US_SU-ITS, US_Swan, US_UChicago, US_UConn-HPC, US_UCSD, US_Wisconsin
Scopeusertests
Events for this stage

Output patterns

 DestinationPatternLifetimeFor next stageRSE expression
1Rucio usertests:pdvd-tdebde-test-fnal-w147s1p1np02vd_raw_run038131*.*2592000False

Environment variables

NameValue
FHICL_TAR/cvmfs/fifeuser3.opensciencegrid.org/sw/dune/d0cd8f293e7716f3710e79fd7fb9e1c56dc2d7ef
INPUT_TAR_DIR_LOCAL/cvmfs/fifeuser2.opensciencegrid.org/sw/dune/d672b14eb7839876bbd543a30533c5f2278d8a12

File states

Total filesFindingUnallocatedAllocatedOutputtingProcessedNot foundFailed
5800005800

Job states

TotalSubmittedStartedProcessingOutputtingFinishedNotusedAbortedStalledJobscript errorOutputting failedNone processed
87000087000000
Files processed0010102020303040405050Jul-30 07:00Jul-30 08:00Jul-30 09:00Files processedBin start timesNumber per binNL_SURFsaraUK_QMULUK_EdinburghUK_ManchesterUK_RAL-Tier1NL_NIKHEFFR_CCIN2P3ES_PIC
Replicas per RSE58490.025244.558269.975244.50000000000003Replicas per RSEDUNE_CERN_EOS (50%)FNAL_DCACHE (50%)

RSEs used

NameInputsOutputs
DUNE_CERN_EOS580
SURFSARA0129
DUNE_FR_CCIN2P3_DISK012
DUNE_UK_GLASGOW012
NIKHEF012
DUNE_UK_MANCHESTER_CEPH03
QMUL03
RAL_ECHO03

Stats of processed input files as CSV or JSON, and of uploaded output files as CSV or JSON (up to 10000 files included)

Jobscript

#!/bin/bash
:<<'EOF'

To use this jobscript to process 10 files from the dc4-vd-coldbox-bottom
data and put the output in the usertests namespace (MetaCat) and 
scope (Rucio), and in the usertests:output-test-01 dataset in MetaCat and
Rucio, use this command to create the workflow:

justin simple-workflow \
--mql \
"files from dune:all where core.run_type='dc4-vd-coldbox-bottom' and dune.campaign='dc4' limit 10" \
--jobscript dc4-vd-coldbox-bottom.jobscript --max-distance 30 --rss-mb 4000 \
--scope usertests --output-pattern '*_reco_data_*.root:output-test-01' 

The following optional environment variables can be set when creating the
workflow/stage: FCL_FILE, NUM_EVENTS, DUNE_VERSION, DUNE_QUALIFIER 

EOF

# fcl file and DUNE software version/qualifier to be used
FCL_FILE=standard_reco_stage1_protodunevd_cnr_keepup.fcl
DUNE_VERSION=${DUNE_VERSION:-v10_08_01d00}
DUNE_QUALIFIER=${DUNE_QUALIFIER:-e26:prof}

# number of events to process from the input file
if [ "$NUM_EVENTS" != "" ] ; then
 events_option="-n $NUM_EVENTS"
fi

# First get an unprocessed file from this stage
did_pfn_rse=`$JUSTIN_PATH/justin-get-file`

if [ "$did_pfn_rse" = "" ] ; then
  echo "Nothing to process - exit jobscript"
  exit 0
fi

# Keep a record of all input DIDs, for pdjson2meta file -> DID mapping
echo "$did_pfn_rse" | cut -f1 -d' ' >>all-input-dids.txt

# pfn is also needed when creating justin-processed-pfns.txt
pfn=`echo $did_pfn_rse | cut -f2 -d' '`
echo "Input PFN = $pfn"

# Setup DUNE environment
source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh

export PRODUCTS=$INPUT_TAR_DIR_LOCAL:${PRODUCTS}

echo "PRODUCTS: ${PRODUCTS}"

setup dunesw "$DUNE_VERSION" -q "$DUNE_QUALIFIER"

echo "DUNESW_DIR: ${DUNESW_DIR}"

# Properly setup custom code with INPUT_TAR_DIR_LOCAL

export DUNESW_DIR=${INPUT_TAR_DIR_LOCAL}/dunesw/${DUNE_VERSION}
export DUNESW_FQ_DIR=${DUNESW_DIR}/slf7.x86_64.e26.prof
export DUNESW_LIB=${DUNESW_FQ_DIR}/lib

export DUNECORE_DIR=${INPUT_TAR_DIR_LOCAL}/dunecore/${DUNE_VERSION}
export DUNECORE_LIB=${DUNECORE_DIR}/include
export DUNECORE_FQ_DIR=${DUNECORE_DIR}/slf7.x86_64.e26.prof
export DUNECORE_LIB=${DUNECORE_FQ_DIR}/lib

$export DUNERECO_DIR=${INPUT_TAR_DIR_LOCAL}/dunereco/${DUNE_VERSION}
$export DUNERECO_LIB=${DUNERECO_DIR}/include
$export DUNERECO_FQ_DIR=${DUNERECO_DIR}/slf7.x86_64.e26.prof
$export DUNERECO_LIB=${DUNERECO_FQ_DIR}/lib

$export WIRECELL_PATH=${DUNE_PARDATA_DIR}/WireCellData
$export WIRECELL_PATH=${WIRECELL_DIR}/Linux64bit+3.10-2.17-e26-prof/share/wirecell:${WIRECELL_PATH}
$export WIRECELL_PATH=${DUNERECO_DIR}/wire-cell-cfg:${WIRECELL_PATH}

export DUNEPROTOTYPES_DIR=${INPUT_TAR_DIR_LOCAL}/duneprototypes/${DUNE_VERSION}
export DUNEPROTOTYPES_INC=${DUNEPROTOTYPES_DIR}/include
export DUNEPROTOTYPES_FQ_DIR=${DUNEPROTOTYPES_DIR}/slf7.x86_64.e26.prof
export DUNEPROTOTYPES_LIB=${DUNEPROTOTYPES_FQ_DIR}/lib

export FHICL_FILE_PATH=${DUNESW_DIR}/fcl:${FHICL_FILE_PATH}
export FHICL_FILE_PATH=${DUNEPROTOTYPES_DIR}/fcl:${FHICL_FILE_PATH}
$export FHICL_FILE_PATH=${DUNERECO_DIR}/fcl:${FHICL_FILE_PATH}
export FHICL_FILE_PATH=${INPUT_TAR_DIR_LOCAL}:${FHICL_FILE_PATH}
export FHICL_FILE_PATH=${FHICL_TAR}:${FHICL_FILE_PATH}

export FW_SEARCH_PATH=${INPUT_TAR_DIR_LOCAL}/config_data:$FW_SEARCH_PATH
export FW_SEARCH_PATH=${INPUT_TAR_DIR_LOCAL}:$FW_SEARCH_PATH
export FW_SEARCH_PATH=${FHICL_TAR}:$FW_SEARCH_PATH

#echo "DUNESW_DIR: ${DUNESW_DIR}"
#echo "DUNERECO_DIR: ${DUNERECO_DIR}"
#echo "DUNEPROTOTYPES_DIR: ${DUNEPROTOTYPES_DIR}"
#echo "WIRECELL_PATH: ${WIRECELL_PATH}"
echo "FHICL_FILE_PATH: ${FHICL_FILE_PATH}"


export OMP_NUM_THREADS=${JUSTIN_PROCESSORS} 

# Construct outFile from input $pfn 
now=$(date -u +"%Y-%m-%dT_%H%M%SZ")
Ffname=`echo $pfn | awk -F/ '{print $NF}'`
fname=`echo $Ffname | awk -F. '{print $1}'`
outFile=${fname}_tde_bde_stage1_dev_${now}

campaign="justIN.r${JUSTIN_WORKFLOW_ID}s${JUSTIN_STAGE_ID}"

(
# Do the scary preload stuff in a subshell!
export LD_PRELOAD=${XROOTD_LIB}/libXrdPosixPreload.so
echo "$LD_PRELOAD"
lar -c $FCL_FILE $events_option -T ${outFile}_hist.root -o ${outFile}.root "$pfn" > ${outFile}.log 2>&1
)

# Subshell exits with exit code of last command
larExit=$?
echo "lar exit code $larExit"
echo "$pfn" > justin-processed-pfns.txt

ls -lRS

# Create compressed tar file with all log files 
tar zcf `echo "$JUSTIN_JOBSUB_ID.logs.tgz" | sed 's/@/_/g'` *.log
#exit $jobscriptExit
exit $larExit

justIN time: 2025-08-04 18:26:03 UTC       justIN version: 01.04.00