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Workflow 1937, Stage 1

Priority	50
Processors	1
Wall seconds	80000
Image	/cvmfs/singularity.opensciencegrid.org/fermilab/fnal-wn-sl7:latest
RSS bytes	4194304000 (4000 MiB)
Max distance for inputs	3000.0
Enabled input RSEs	CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, MONTECARLO, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled output RSEs	CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled sites	BR_CBPF, CA_SFU, CERN, CH_UNIBE-LHEP, CZ_FZU, ES_CIEMAT, ES_PIC, FR_CCIN2P3, IT_CNAF, NL_NIKHEF, NL_SURFsara, UK_Bristol, UK_Brunel, UK_Durham, UK_Edinburgh, UK_Glasgow, UK_Lancaster, UK_Liverpool, UK_Manchester, UK_Oxford, UK_QMUL, UK_RAL-PPD, UK_RAL-Tier1, UK_Sheffield, US_Colorado, US_FNAL-FermiGrid, US_FNAL-T1, US_Michigan, US_PuertoRico, US_SU-ITS, US_Swan, US_UChicago, US_UConn-HPC, US_UCSD, US_Wisconsin
Scope	usertests
Events for this stage

Output patterns

	Destination	Pattern	Lifetime	For next stage	RSE expression
1	https://fndcadoor.fnal.gov:2880/dune/scratch/users/ichong/fnal/01937/1	caf*.root

Environment variables

Name	Value
DUNE_QUALIFIER	e26:prof
DUNE_VERSION	v10_10_00d00
FCL_FILE	/cvmfs/fifeuser2.opensciencegrid.org/sw/dune/152f797bfcf315d3c4c3684f118c8573b0c3662c/atm-norm-vtx-reco.fcl
FCL_SECONDARY	cafmaker_atmos_dune10kt_1x2x6_runreco-nuenergy-nuangular_geov5.fcl
NUM_EVENTS	200

File states

Total files	Finding	Unallocated	Allocated	Outputting	Processed	Not found	Failed
1000	0	0	0	0	498	0	502

Job states

Total	Submitted	Started	Processing	Outputting	Finished	Notused	Aborted	Stalled	Jobscript error	Outputting failed	None processed
4535	0	0	0	0	1436	0	412	112	0	2575	0

RSEs used

Name	Inputs	Outputs
PRAGUE	1921	0
RAL_ECHO	419	0
QMUL	347	0
NIKHEF	301	0
RAL-PP	272	0
SURFSARA	249	0
DUNE_FR_CCIN2P3_DISK	55	0
DUNE_ES_PIC	31	0
None	0	981

Stats of processed input files as CSV or JSON, and of uploaded output files as CSV or JSON (up to 10000 files included)

File reset events, by site

Site	Allocated	Outputting
CERN	69	369
CZ_FZU	56	285
UK_QMUL	53	144
UK_RAL-PPD	47	162
ES_PIC	46	185
UK_Manchester	45	164
NL_SURFsara	40	116
US_FNAL-FermiGrid	28	292
UK_RAL-Tier1	16	55
UK_Lancaster	10	32
UK_Oxford	10	85
US_UCSD	8	78
US_UChicago	6	14
UK_Durham	5	65
UK_Glasgow	5	53
US_Wisconsin	2	10
UK_Bristol	2	6
US_PuertoRico	2	10
BR_CBPF	2	11
US_FNAL-T1	1	4
IT_CNAF	1	0
FR_CCIN2P3	0	1

Jobscript

#!/bin/bash
:<<'EOF'
This jobscript runs ONLY the CAF-making step on an input file from JustIn.

Required environment variables:
  - FCL_SECONDARY         (FHiCL for CAF making)  [REQUIRED]
  - DUNE_VERSION         
  - DUNE_QUALIFIER        
  - CODE_TAR_DIR_LOCAL    (optional: path to localProducts/... for custom code)
  - NUM_EVENTS            (optional: limit events, e.g. -n 10)
EOF


# === Number of events option ===
events_option=""
if [ -n "${NUM_EVENTS:-}" ]; then
  events_option="-n $NUM_EVENTS"
fi

# === Get a file from JustIn ===
did_pfn_rse=$($JUSTIN_PATH/justin-get-file)
if [ -z "$did_pfn_rse" ]; then
  echo "No file assigned. Exiting jobscript."
  exit 0
fi

# === Track input DID for MetaCat ===
echo "$did_pfn_rse" | cut -f1 -d' ' >> all-input-dids.txt

# === Parse PFN from DID ===
pfn=$(echo "$did_pfn_rse" | cut -d' ' -f2)
echo "Input PFN = $pfn"
fname=$(basename "$pfn" .root)

# === Setup DUNE software ===
source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh
setup dunesw "$DUNE_VERSION" -q "$DUNE_QUALIFIER"


# === Generate common timestamp and random suffix for output renaming ===
timestamp=$(date -u +"%Y-%m-%dT_%H%M%SZ")
rand_suffix=$((1 + RANDOM % 10))

# === Output file naming ===
fname=$(basename "$pfn" .root)
outFile="${fname}_truthvtx_${timestamp}.root"
logFile="truthvtx_${timestamp}_vtx.log"

# === Set FW search path ===
XML_DIR_MASTER=$(dirname "$XML_MASTER")
XML_DIR_NEUTRINO=$(dirname "$XML_NEUTRINO")
export FW_SEARCH_PATH="$XML_DIR_MASTER:$XML_DIR_NEUTRINO:$FW_SEARCH_PATH"




# === Run lar (primary) ===
export LD_PRELOAD=${XROOTD_LIB}/libXrdPosixPreload.so
echo "Running LArSoft with FCL: $FCL_FILE"
lar -c "$FCL_FILE" $events_option -o "$outFile" -s "$pfn" > "$logFile" 2>&1









# === Timestamp for outputs ===
timestamp=$(date -u +"%Y-%m-%dT_%H%M%SZ")

# === CAF output & log names ===
secondary_out="caf_${fname}_${timestamp}.root"
secondary_log="caf_${fname}_${timestamp}.log"

# === Run CAF step ===
export LD_PRELOAD=${XROOTD_LIB}/libXrdPosixPreload.so
echo "Running CAF step with FCL_SECONDARY: $FCL_SECONDARY"
echo "Output: $secondary_out"
lar -c "$FCL_SECONDARY" $events_option -o "$secondary_out" -s "$outFile" > "$secondary_log" 2>&1
# === Rename CAF output root file to include timestamp if needed ===
new_caf_out="caf_normalvtx_${timestamp}.root"
mv caf.root "$new_caf_out"
echo "Renamed caf.root -> $new_caf_out"
cafExit=$?

mv jobscript.log jobscript_$(date +%Y%m%d_%H%M%S).log


# === Show last 100 lines of CAF log ===
echo '=== Start last 100 lines of CAF log file ==='
tail -100 "$secondary_log" || true
echo '=== End last 100 lines of CAF log file ==='

# === Mark processed if success ===
if [ $cafExit -eq 0 ]; then
  echo "$pfn" > justin-processed-pfns.txt
  jobscriptExit=0
else
  jobscriptExit=1
fi

# === Package logs ===
tar zcf "${JUSTIN_JOBSUB_ID//[@]/_}.logs.tgz" *.log

# === Display output summary ===
echo "=== Generated output files ==="
ls -1 *.* 2>/dev/null | grep -v 'all-input-dids.txt' || echo "No output files found."

exit $jobscriptExit

justIN time: 2025-09-18 19:09:24 UTC       justIN version: 01.05.00