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Workflow 1957, Stage 1

Priority	50
Processors	1
Wall seconds	80000
Image	/cvmfs/singularity.opensciencegrid.org/fermilab/fnal-wn-sl7:latest
RSS bytes	4194304000 (4000 MiB)
Max distance for inputs	3000.0
Enabled input RSEs	CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, MONTECARLO, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled output RSEs	CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled sites	BR_CBPF, CA_SFU, CERN, CH_UNIBE-LHEP, CZ_FZU, ES_CIEMAT, ES_PIC, FR_CCIN2P3, IT_CNAF, NL_NIKHEF, NL_SURFsara, UK_Bristol, UK_Brunel, UK_Durham, UK_Edinburgh, UK_Glasgow, UK_Lancaster, UK_Liverpool, UK_Manchester, UK_Oxford, UK_QMUL, UK_RAL-PPD, UK_RAL-Tier1, UK_Sheffield, US_Colorado, US_FNAL-FermiGrid, US_FNAL-T1, US_Michigan, US_PuertoRico, US_SU-ITS, US_Swan, US_UChicago, US_UConn-HPC, US_UCSD, US_Wisconsin
Scope	usertests
Events for this stage

Output patterns

	Destination	Pattern	Lifetime	For next stage	RSE expression
1	https://fndcadoor.fnal.gov:2880/dune/scratch/users/ichong/fnal/01957/1	caf*.root

Environment variables

Name	Value
DUNE_QUALIFIER	e26:prof
DUNE_VERSION	v10_10_00d00
FCL_FILE	/cvmfs/fifeuser2.opensciencegrid.org/sw/dune/152f797bfcf315d3c4c3684f118c8573b0c3662c/atm-norm-vtx-reco.fcl
FCL_SECONDARY	cafmaker_atmos_dune10kt_1x2x6_runreco-nuenergy-nuangular_geov5.fcl
NUM_EVENTS	200

File states

Total files	Finding	Unallocated	Allocated	Outputting	Processed	Not found	Failed
1000	0	0	0	0	0	0	1000

Job states

Total	Submitted	Started	Processing	Outputting	Finished	Notused	Aborted	Stalled	Jobscript error	Outputting failed	None processed
7678	0	0	0	0	1676	0	649	87	0	5266	0

RSEs used

Name	Inputs	Outputs
PRAGUE	3182	0
RAL_ECHO	592	0
SURFSARA	515	0
NIKHEF	494	0
QMUL	482	0
RAL-PP	473	0
DUNE_FR_CCIN2P3_DISK	177	0
DUNE_ES_PIC	85	0

Stats of processed input files as CSV or JSON, and of uploaded output files as CSV or JSON (up to 10000 files included)

File reset events, by site

Site	Allocated	Outputting
CERN	162	1163
UK_Manchester	84	507
CZ_FZU	79	390
US_FNAL-FermiGrid	59	727
UK_RAL-PPD	54	268
UK_QMUL	30	115
UK_Lancaster	24	158
UK_Bristol	22	48
ES_PIC	22	240
NL_SURFsara	22	120
UK_Oxford	19	129
UK_RAL-Tier1	16	89
UK_Glasgow	11	79
US_UChicago	10	138
US_FNAL-T1	6	28
US_Wisconsin	5	17
US_PuertoRico	3	9
BR_CBPF	3	17
US_UCSD	3	33
NL_NIKHEF	3	1
FR_CCIN2P3	3	31
UK_Durham	2	34
IT_CNAF	2	15

Jobscript

#!/bin/bash
:<<'EOF'
This jobscript runs ONLY the CAF-making step on an input file from JustIn.

Required environment variables:
  - FCL_SECONDARY         (FHiCL for CAF making)  [REQUIRED]
  - DUNE_VERSION         
  - DUNE_QUALIFIER        
  - CODE_TAR_DIR_LOCAL    (optional: path to localProducts/... for custom code)
  - NUM_EVENTS            (optional: limit events, e.g. -n 10)
EOF


# === Number of events option ===
events_option=""
if [ -n "${NUM_EVENTS:-}" ]; then
  events_option="-n $NUM_EVENTS"
fi

# === Get a file from JustIn ===
did_pfn_rse=$($JUSTIN_PATH/justin-get-file)
if [ -z "$did_pfn_rse" ]; then
  echo "No file assigned. Exiting jobscript."
  exit 0
fi

# === Track input DID for MetaCat ===
echo "$did_pfn_rse" | cut -f1 -d' ' >> all-input-dids.txt

# === Parse PFN from DID ===
pfn=$(echo "$did_pfn_rse" | cut -d' ' -f2)
echo "Input PFN = $pfn"
fname=$(basename "$pfn" .root)

# === Setup DUNE software ===
source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh
setup dunesw "$DUNE_VERSION" -q "$DUNE_QUALIFIER"


# === Generate common timestamp and random suffix for output renaming ===
timestamp=$(date -u +"%Y-%m-%dT_%H%M%SZ")
rand_suffix=$((1 + RANDOM % 10))

# === Output file naming ===
fname=$(basename "$pfn" .root)
outFile="${fname}_truthvtx_${timestamp}.root"
logFile="truthvtx_${timestamp}_vtx.log"

# === Set FW search path ===
XML_DIR_MASTER=$(dirname "$XML_MASTER")
XML_DIR_NEUTRINO=$(dirname "$XML_NEUTRINO")
export FW_SEARCH_PATH="$XML_DIR_MASTER:$XML_DIR_NEUTRINO:$FW_SEARCH_PATH"




# === Run lar (primary) ===
export LD_PRELOAD=${XROOTD_LIB}/libXrdPosixPreload.so
echo "Running LArSoft with FCL: $FCL_FILE"
lar -c "$FCL_FILE" $events_option -o "$outFile" -s "$pfn" > "$logFile" 2>&1









# === Timestamp for outputs ===
timestamp=$(date -u +"%Y-%m-%dT_%H%M%SZ")

# === CAF output & log names ===
secondary_out="caf_${fname}_${timestamp}.root"
secondary_log="caf_${fname}_${timestamp}.log"

# === Run CAF step ===
export LD_PRELOAD=${XROOTD_LIB}/libXrdPosixPreload.so
echo "Running CAF step with FCL_SECONDARY: $FCL_SECONDARY"
echo "Output: $secondary_out"
lar -c "$FCL_SECONDARY" $events_option -o "$secondary_out" -s "$outFile" > "$secondary_log" 2>&1
# === Rename CAF output root file to include timestamp if needed ===
new_caf_out="caf_normalvtx_${timestamp}.root"
mv caf.root "$new_caf_out"
echo "Renamed caf.root -> $new_caf_out"
cafExit=$?

mv jobscript.log jobscript_$(date +%Y%m%d_%H%M%S).log


# === Show last 100 lines of CAF log ===
echo '=== Start last 100 lines of CAF log file ==='
tail -100 "$secondary_log" || true
echo '=== End last 100 lines of CAF log file ==='

# === Mark processed if success ===
if [ $cafExit -eq 0 ]; then
  echo "$pfn" > justin-processed-pfns.txt
  jobscriptExit=0
else
  jobscriptExit=1
fi

# === Package logs ===
tar zcf "${JUSTIN_JOBSUB_ID//[@]/_}.logs.tgz" *.log

# === Display output summary ===
echo "=== Generated output files ==="
ls -1 *.* 2>/dev/null | grep -v 'all-input-dids.txt' || echo "No output files found."

exit $jobscriptExit

justIN time: 2025-09-18 19:09:08 UTC       justIN version: 01.05.00