Workflow 2246, Stage 1

Priority	50
Processors	1
Wall seconds	80000
Image	/cvmfs/singularity.opensciencegrid.org/fermilab/fnal-wn-sl7:latest
RSS bytes	2097152000 (2000 MiB)
Max distance for inputs	0.0
Enabled input RSEs	CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, MONTECARLO, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled output RSEs	CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled sites	BR_CBPF, CA_SFU, CERN, CH_UNIBE-LHEP, CZ_FZU, ES_CIEMAT, ES_PIC, FR_CCIN2P3, IT_CNAF, NL_NIKHEF, NL_SURFsara, UK_Bristol, UK_Brunel, UK_Durham, UK_Edinburgh, UK_Glasgow, UK_Lancaster, UK_Liverpool, UK_Manchester, UK_Oxford, UK_QMUL, UK_RAL-PPD, UK_RAL-Tier1, UK_Sheffield, US_Colorado, US_FNAL-FermiGrid, US_FNAL-T1, US_Michigan, US_PuertoRico, US_SU-ITS, US_Swan, US_UChicago, US_UConn-HPC, US_UCSD, US_Wisconsin
Scope	usertests
Events for this stage

Output patterns

	Destination	Pattern	Lifetime	For next stage	RSE expression
1	https://fndcadoor.fnal.gov:2880/dune/scratch/users/osbiston/fnal/02246/1	mydetsimreco1reco2_*.root

Environment variables

Name	Value
INPUT_TAR_DIR_LOCAL	/cvmfs/fifeuser2.opensciencegrid.org/sw/dune/20a71b398485e88cdeb467ad8c4e33a628a3f9ac
NUM_EVENTS	10

File states

Total files	Finding	Unallocated	Allocated	Outputting	Processed	Not found	Failed
1000	0	0	0	0	999	1	0

Job states

Total	Submitted	Started	Processing	Outputting	Finished	Notused	Aborted	Stalled	Jobscript error	Outputting failed	None processed
1763	0	0	0	0	1525	0	238	0	0	0	0

RSEs used

Name	Inputs	Outputs
DUNE_US_FNAL_DISK_STAGE	1237	0
None	0	890

Stats of processed input files as CSV or JSON, and of uploaded output files as CSV or JSON (up to 10000 files included)

File reset events, by site

Site	Allocated	Outputting
US_FNAL-FermiGrid	220	0
US_FNAL-T1	18	0

Jobscript

#!/bin/bash
:<<'EOF'

To use this jobscript to process 5 files from the dataset fardet-hd__fd_mc_2023a_reco2__full-reconstructed__v09_81_00d02__standard_reco2_dune10kt_nu_1x2x6__prodgenie_nu_dune10kt_1x2x6__out1__validation
data and put the output in the $USER namespace (MetaCat) and saves the output in /scratch
Use this command to create the workflow:

justin simple-workflow \
--mql \
"files from fardet-hd:fardet-hd__fd_mc_2023a__hit-reconstructed__v09_78_01d01__standard_reco1_dune10kt_1x2x6__prodgenie_nu_dune10kt_1x2x6__out1__v1_official limit 5  ordered"\
--jobscript submit_ana.jobscript --rss-mb 4000 \
--scope higuera --output-pattern '*_myreco2_*.root:$FNALURL/$USERF' 

The following optional environment variables can be set when creating the
workflow/stage: FCL_FILE, NUM_EVENTS, DUNE_VERSION, DUNE_QUALIFIER 

EOF

# fcl file and DUNE software version/qualifier to be used
FCL_FILE=${FCL_FILE:-$INPUT_TAR_DIR_LOCAL/detsim_lowe_full_48.fcl}
FCL_FILE2=${FCL_FILE2:-$INPUT_TAR_DIR_LOCAL/reco1_lowe_full.fcl}
FCL_FILE3=${FCL_FILE3:-$INPUT_TAR_DIR_LOCAL/reco2_lowe_full.fcl}
DUNE_VERSION=${DUNE_VERSION:-v09_92_00d00}
DUNE_QUALIFIER=${DUNE_QUALIFIER:-e26:prof}
FW_SEARCH_PATH=$INPUT_TAR_DIR_LOCAL:$FW_SEARCH_PATH:.:${INPUT_TAR_DIR_LOCAL}
FHICL_FILE_PATH=$INPUT_TAR_DIR_LOCAL:$FHICL_FILE_PATH:.

cp ${INPUT_TAR_DIR_LOCAL}/*.fcl .
cp ${INPUT_TAR_DIR_LOCAL}/*.xml .

# number of events to process from the input file
if [ "$NUM_EVENTS" != "" ] ; then
 events_option="-n $NUM_EVENTS"
fi

# First get an unprocessed file from this stage
did_pfn_rse=`$JUSTIN_PATH/justin-get-file`

if [ "$did_pfn_rse" = "" ] ; then
  echo "Nothing to process - exit jobscript"
  exit 0
fi

# Keep a record of all input DIDs, for pdjson2meta file -> DID mapping
echo "$did_pfn_rse" | cut -f1 -d' ' >>all-input-dids.txt

# pfn is also needed when creating justin-processed-pfns.txt
pfn=`echo $did_pfn_rse | cut -f2 -d' '`
echo "Input PFN = $pfn"

# Setup DUNE environment
source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh
source $INPUT_TAR_DIR_LOCAL/setup
export PRODUCTS="${INPUT_TAR_DIR_LOCAL}/v09_92_00.prof/localProducts_larsoft_v09_92_00_e26_prof/:$PRODUCTS"
# Then we can set up our local products
setup dunesw "$DUNE_VERSION" -q "$DUNE_QUALIFIER"
mrbslp

# Construct outFile from input $pfn 
now=$(date -u +"%Y%m%dT%H%M%SZ")
Ffname=`echo $pfn | awk -F/ '{print $NF}'`
fname=`echo $Ffname | awk -F. '{print $1}'`
outFile=mydetsimreco1reco2_${now}.root

campaign="justIN.w${JUSTIN_WORKFLOW_ID}s${JUSTIN_STAGE_ID}"

# Here is where the LArSoft command is call it 
(
# Do the scary preload stuff in a subshell!
export LD_PRELOAD=${XROOTD_LIB}/libXrdPosixPreload.so
echo "$LD_PRELOAD"

lar -c $FCL_FILE $events_option -o matt_detsim.root "$pfn" > mydetsim_${now}.log 2>&1 \
&& lar -c $FCL_FILE2 -n -1 -s matt_detsim.root -o matt_reco1.root > myreco1_${now}.log 2>&1 \
&& lar -c $FCL_FILE3 -n -1 -s matt_reco1.root -o $outFile > myreco2_${now}.log 2>&1
)

echo '=== Start last 100 lines of lar log file ==='
tail -100 mydetsim_${now}.log
echo '=== End last 100 lines of lar log file ==='

echo '=== Start last 100 lines of lar log file ==='
tail -100 myreco1_${now}.log
echo '=== End last 100 lines of lar log file ==='

echo '=== Start last 100 lines of lar log file ==='
tail -100 myreco2_${now}.log
echo '=== End last 100 lines of lar log file ==='


# Subshell exits with exit code of last command
larExit=$?
echo "lar exit code $larExit"

if [ $larExit -eq 0 ] ; then
  # Success !
  echo "$pfn" > justin-processed-pfns.txt
  jobscriptExit=0
else
  # Oh :(
  jobscriptExit=1
fi

# Create compressed tar file with all log files 
tar zcf `echo "$JUSTIN_JOBSUB_ID.logs.tgz" | sed 's/@/_/g'` *.log
exit $jobscriptExit