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Workflow 226, Stage 1

Priority50
Processors1
Wall seconds80000
Image/cvmfs/singularity.opensciencegrid.org/fermilab/fnal-wn-sl7:latest
RSS bytes8388608000 (8000 MiB)
Max distance for inputs100.0
Enabled input RSEs CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, MONTECARLO, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled output RSEs CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled sites BR_CBPF, CA_SFU, CERN, CH_UNIBE-LHEP, CZ_FZU, ES_CIEMAT, ES_PIC, FR_CCIN2P3, IT_CNAF, NL_NIKHEF, NL_SURFsara, UK_Bristol, UK_Brunel, UK_Durham, UK_Edinburgh, UK_Glasgow, UK_Imperial, UK_Lancaster, UK_Liverpool, UK_Manchester, UK_Oxford, UK_QMUL, UK_RAL-PPD, UK_RAL-Tier1, UK_Sheffield, US_Colorado, US_FNAL-FermiGrid, US_FNAL-T1, US_Michigan, US_PuertoRico, US_SU-ITS, US_Swan, US_UChicago, US_UConn-HPC, US_UCSD, US_Wisconsin
Scopefardet-vd
Events for this stage

Output patterns

 DestinationPatternLifetimeFor next stageRSE expression
1Rucio fardet-vd:fardet-vd-reco_226-fnal-w226s1p1*reco.root51840000False

Environment variables

NameValue
INPUT_DIR/cvmfs/fifeuser3.opensciencegrid.org/sw/dune/9227c25e1635d18779282cfab801fcdc7cd063b1

File states

Total filesFindingUnallocatedAllocatedOutputtingProcessedNot foundFailed
1000000001000000

Job states

TotalSubmittedStartedProcessingOutputtingFinishedNotusedAbortedStalledJobscript errorOutputting failedNone processed
107450000107130032000
Files processed0020020040040060060080080010001000120012001400140016001600Aug-01 15:00Aug-01 17:00Aug-01 19:00Aug-01 21:00Aug-01 23:00Aug-02 01:00Aug-02 03:00Aug-02 05:00Aug-02 07:00Aug-02 09:00Aug-02 11:00Aug-02 13:00Aug-02 15:00Aug-02 17:00Aug-02 19:00Aug-02 21:00Aug-02 23:00Files processedBin start timesNumber per binUK_GlasgowUS_FNAL-FermiG…US_FNAL-FermiGridUS_ColoradoUK_RAL-PPDES_PICUS_WisconsinCZ_FZUCERNUS_UCSDNL_SURFsaraUK_DurhamUK_QMULUK_OxfordUK_ManchesterUK_LancasterUS_UChicagoUS_FNAL-T1IT_CNAFUK_EdinburghUK_BrunelUS_PuertoRico

RSEs used

NameInputsOutputs
MONTECARLO100190
DUNE_US_FNAL_DISK_STAGE08814

Stats of processed input files as CSV or JSON, and of uploaded output files as CSV or JSON (up to 10000 files included)

File reset events, by site

SiteAllocatedOutputting
UK_RAL-PPD100
ES_PIC90

Jobscript

#!/bin/bash
#
source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh
setup metacat
export METACAT_SERVER_URL=https://metacat.fnal.gov:9443/dune_meta_prod/app
export METACAT_AUTH_SERVER_URL=https://metacat.fnal.gov:8143/auth/dune

#Setup recent lar software suite
setup dunesw \
   "${DUNE_VERSION:-v09_91_04d00}" \
   -q "${DUNE_QUALIFIER:-e26:prof}"
echo "printing env"


if [ -z ${JUSTIN_PROCESSORS} ]; then
  JUSTIN_PROCESSORS=1
fi

echo "Justin processors: ${JUSTIN_PROCESSORS}"

export TF_NUM_THREADS=${JUSTIN_PROCESSORS}   
export OPENBLAS_NUM_THREADS=${JUSTIN_PROCESSORS} 
export JULIA_NUM_THREADS=${JUSTIN_PROCESSORS} 
export MKL_NUM_THREADS=${JUSTIN_PROCESSORS} 
export NUMEXPR_NUM_THREADS=${JUSTIN_PROCESSORS} 
export OMP_NUM_THREADS=${JUSTIN_PROCESSORS}  

#env

echo "Will use justin-get-file"
DID_PFN_RSE=`$JUSTIN_PATH/justin-get-file`
if [ "${DID_PFN_RSE}" == "" ] ; then
  echo "Could not get file"
  exit 0
fi
pfn=`echo ${DID_PFN_RSE} | cut -f2 -d' '` 

if [ -z ${LINENUMBER} ] ; then
  LINENUMBER=$pfn
fi

# echo "linenumber " $LINENUMBER
ex_code=0
pstep=10
tstep=0

now=$(date -u +"%Y%m%dT%H%M%SZ")
namespace=${JUSTIN_SCOPE:-"usertests"} 
echo "===============JUSTIN_JOBSUB_ID"
runid=$JUSTIN_WORKFLOW_ID
CLUSTER=`echo $JUSTIN_JOBSUB_ID | awk '{split($0,a,"."); print a[1]}'`
echo $CLUSTER

# define run number and set number of events
firstsubrun=0
#nevts=1
nevts=10
e_pfn=$(echo "$pfn" | sed 's/^0*//')
start_e_pfn=$((e_pfn -1))
firstevent=$((start_e_pfn * nevts + 1))

echo "======checking===="
echo ${DID_PFN_RSE}
echo ${pfn}
echo $runid
echo $firstsubrun
echo $nevts
echo $firstevent



# Run Generator
echo "============generator=========================" 
prodname="prodbackground_radiological_decay0_dunevd10kt_1x8x14_${now}_gen_${pfn}" 
istep=1
tstep=$((tstep+1))
nstep=$(($pstep*$tstep)) 
tcode=$((nstep+istep))
tcode=$((tcode*1000)) 
 
#lar -c prodbackground_radiological_decay0_dunevd10kt_1x8x14.fcl -o ${prodname}.root -n 10 
lar -c prodbackground_radiological_decay0_dunevd10kt_1x8x14.fcl -o ${prodname}.root -n $nevts -e ${runid}:${firstsubrun}:${firstevent}

exit_code=$?  
ex_code=$((exit_code+tcode))
files=`ls *_${now}_*`  
if [ $exit_code -ne 0 ]; then
 echo "ERROR: lar (generation) exit code: $ex_code " 
 echo "output files size: "
     for f in $files 
      do
       size=`stat -c %s $f`
       echo   $f $size 
      done   
 return $ex_code 
fi
 
# Stage 1 G4
echo "============G4 stage1=========================" 
g4stage1_name="${prodname}_supernova_g4stage1"
tstep=$((tstep+1))
nstep=$(($pstep*$tstep)) 
istep=1 
tcode=$((nstep+istep))
tcode=$((tcode*1000))

lar -c supernova_g4stage1_dunevd10kt_1x8x14_3view_30deg.fcl   ${prodname}.root -o ${g4stage1_name}.root -n -1

exit_code=$?    
ex_code=$((exit_code+tcode))
files=`ls *_${now}_*`  
if [ $exit_code -ne 0 ]; then
  echo "ERROR: lar (geant4 step1) exit code: $ex_code " 
   echo "output files size: "
     for f in $files 
      do
       size=`stat -c %s $f`
       echo   $f $size 
      done   
  return $ex_code 
fi
 

# Stage 2 G4  
echo "============G4 stage2=========================" 
g4stage2_name="${g4stage1_name}_g4stage2"
tstep=$((tstep+1))	 
nstep=$(($pstep*$tstep)) 
istep=1 
tcode=$((nstep+istep))
tcode=$((tcode*1000))

lar -c  standard_g4stage2_dunevd10kt_1x8x14_3view_30deg.fcl ${g4stage1_name}.root -o ${g4stage2_name}.root -n -1

exit_code=$?    
ex_code=$((exit_code+tcode))
files=`ls *_${now}_*`  
if [ $exit_code -ne 0 ]; then
  echo "ERROR: lar (geant4 step2) exit code: $ex_code " 
    echo "output files size: "
     for f in $files 
      do
       size=`stat -c %s $f`
       echo   $f $size 
      done   
 return $ex_code 
fi
 
# Detsim
echo "============detsim========================="  
detsim_name="${g4stage2_name}_detsim"
tstep=$((tstep+1))
nstep=$(($pstep*$tstep)) 
istep=1

lar -c standard_detsim_dunevd10kt_1x8x14_3view_30deg.fcl ${g4stage2_name}.root  -o ${detsim_name}.root -n -1

exit_code=$?    
ex_code=$((exit_code+tcode))
files=`ls *_${now}_*`  
if [ $exit_code -ne 0 ]; then 
  echo "ERROR: lar (detsim) exit code: $ex_code " 
  echo "output files size: "
     for f in $files 
      do
       size=`stat -c %s $f`
       echo   $f $size 
      done   
  return $ex_code 
fi  
 
# Reco
echo "============reco =========================" 
reco_name="${detsim_name}_reco"
tstep=$((tstep+1))
nstep=$(($pstep*$tstep)) 
istep=1 
tcode=$((nstep+istep))
tcode=$((tcode*1000)) 

lar -c standard_reco1_dunevd10kt_1x8x14_3view_30deg.fcl ${detsim_name}.root -o ${reco_name}.root -n -1


exit_code=$?    
ex_code=$((exit_code+tcode))
files=`ls *_${now}_*`  
if [ $exit_code -ne 0 ]; then
  echo "ERROR: lar (reco) exit code: $ex_code " 
  echo "output files size: "
     for f in $files 
      do
       size=`stat -c %s $f`
       echo   $f $size 
      done   
  return $ex_code 
fi 

istep=$((istep+1))
tcode=$((nstep+istep))
tcode=$((tcode*1000))  
extractor_prod.py --infile ${reco_name}.root --no_crc    --appfamily art --appname reco --appversion  v09_91_04d00  --requestid ritm2205749  --strip_parents --input_json ${INPUT_DIR}/le_input.json> ${reco_name}.root.ext.json  && sed -i -e 's/stepfcl/standard_reco1_dunevd10kt_1x8x14_3view_30deg.fcl/g' ${reco_name}.root.ext.json 

exit_code=$?   
ex_code=$((exit_code+tcode))
files=`ls *_${now}_*`  
if [ $exit_code -gt 1 ]; then 
  echo "ERROR: metadata generation   $ex_code " 
   echo "output files size: "
     for f in $files 
      do
       size=`stat -c %s $f`
       echo   $f $size 
      done   
 return $ex_code 
fi 
 

rm -fr all-input-dids.txt
echo "noparents:noparents.root" > all-input-dids.txt 
python ${INPUT_DIR}/pdjson2metadata ${reco_name}.root.ext.json  all-input-dids.txt usertests > ${reco_name}.root.temp.json 
sed '/DUNE/ s/.*/\L&/' ${reco_name}.root.temp.json > ${reco_name}.root.json

 
exit_code=$?    
ex_code=$((exit_code+tcode))
files=`ls *_${now}_*` 
if [ $exit_code -ne 0 ]; then
  echo "ERROR: metadata writing  $ex_code " 
   echo "output files size: "
     for f in $files 
      do
       size=`stat -c %s $f`
       echo   $f $size 
      done   
  return $ex_code 
fi  
 
 

if [ $? -ne 0 ]
then
  echo "Exiting with error"
  return 1
else
  files=`ls *_${now}_*` 
   for f in $files 
      do
       size=`stat -c %s $f`
       echo "written output file: $f $size"
      done  

  echo "$pfn" > justin-processed-pfns.txt
fi
justIN time: 2025-11-04 01:57:53 UTC       justIN version: 01.05.01