Workflow 3298, Stage 1

Priority	50
Processors	1
Wall seconds	18000
Image	/cvmfs/singularity.opensciencegrid.org/fermilab/fnal-wn-sl7:latest
RSS bytes	4194304000 (4000 MiB)
Max distance for inputs	100.0
Enabled input RSEs	CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, MONTECARLO, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled output RSEs	CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled sites	BR_CBPF, CA_SFU, CERN, CH_UNIBE-LHEP, CZ_FZU, ES_CIEMAT, ES_PIC, FR_CCIN2P3, IT_CNAF, NL_NIKHEF, NL_SURFsara, UK_Bristol, UK_Brunel, UK_Durham, UK_Edinburgh, UK_Glasgow, UK_Lancaster, UK_Liverpool, UK_Manchester, UK_Oxford, UK_QMUL, UK_RAL-PPD, UK_RAL-Tier1, UK_Sheffield, US_Colorado, US_FNAL-FermiGrid, US_FNAL-T1, US_Michigan, US_PuertoRico, US_SU-ITS, US_Swan, US_UChicago, US_UConn-HPC, US_UCSD, US_Wisconsin
Scope	usertests
Events for this stage

Output patterns

	Destination	Pattern	Lifetime	For next stage	RSE expression
1	https://fndcadoor.fnal.gov:2880/dune/scratch/users/pgranger/cafs/fnal/03298/1	caf_fd_hd*.root

Environment variables

Name	Value
DUNE_QUALIFIER	e26:prof
DUNE_VERSION	v10_10_00d00
FCL_FILE	/cvmfs/fifeuser4.opensciencegrid.org/sw/dune/823ff6a419a8685db70967089497d4f07fb2d380/reco_caf.fcl
HAS_ART_OUTPUT	false

File states

Total files	Finding	Unallocated	Allocated	Outputting	Processed	Not found	Failed
10000	0	1436	0	0	6652	0	1912

Job states

Total	Submitted	Started	Processing	Outputting	Finished	Notused	Aborted	Stalled	Jobscript error	Outputting failed	None processed
16521	0	0	0	0	13246	40	276	840	2119	0	0

RSEs used

Name	Inputs	Outputs
PRAGUE	17298	0
SURFSARA	4551	0
NIKHEF	2753	0
RAL_ECHO	1715	0
QMUL	1434	0
RAL-PP	1352	0
DUNE_FR_CCIN2P3_DISK	1061	0
DUNE_ES_PIC	244	0
None	0	874

Stats of processed input files as CSV or JSON, and of uploaded output files as CSV or JSON (up to 10000 files included)

File reset events, by site

Site	Allocated	Outputting
UK_RAL-PPD	609	10
UK_Manchester	597	0
CERN	519	0
CZ_FZU	421	0
US_UChicago	392	20
UK_RAL-Tier1	281	6
ES_PIC	246	1
US_FNAL-FermiGrid	240	10
US_FNAL-T1	193	0
US_UCSD	146	0
UK_QMUL	107	9
UK_Lancaster	103	0
UK_Oxford	95	0
UK_Durham	86	0
IT_CNAF	81	7
US_Wisconsin	68	0
NL_NIKHEF	53	6
UK_Bristol	30	0
UK_Glasgow	27	0
UK_Sheffield	10	0
BR_CBPF	3	0

Jobscript

#!/bin/bash
#
source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh
setup metacat
export METACAT_SERVER_URL=https://metacat.fnal.gov:9443/dune_meta_prod/app
export METACAT_AUTH_SERVER_URL=https://metacat.fnal.gov:8143/auth/dune


##TODO -- write usage

#CAF_FCL="cafmaker_dunevd10kt_1x8x6_3view_30deg_runreco-nuenergy_geov3.fcl"
# RECO_FCL="reco2_atmos_dune10kt_1x2x6_geov5.fcl"
# CAF_FCL="cafmaker_atmos_dune10kt_1x2x6_runreco-nuenergy-nuangular_geov5.fcl"
# echo "Using CAF fcl: ${CAF_FCL}"

# export INPUT_TAR_DIR_LOCAL=${CODE_TAR_DIR_LOCAL}

# if [ ! -z "$FCL_TAR_DIR_LOCAL" ]; then
# 	echo "Using custom fcls from $FCL_TAR_DIR_LOCAL"
# 	source ${CODE_TAR_DIR_LOCAL}/*/localProducts*/setup-grid
# 	mrbslp
# fi

ls -lht $FCL_TAR_DIR_LOCAL

#Setup recent lar software suite
setup dunesw \
   "${DUNE_VERSION:-v09_91_01d00}" \
   -q "${DUNE_QUALIFIER:-e26:prof}"
#echo "printing env"
#env
 

if [ -z ${JUSTIN_PROCESSORS} ]; then
  JUSTIN_PROCESSORS=1
fi

echo "Justin processors: ${JUSTIN_PROCESSORS}"

export TF_NUM_THREADS=${JUSTIN_PROCESSORS}   
export OPENBLAS_NUM_THREADS=${JUSTIN_PROCESSORS} 
export JULIA_NUM_THREADS=${JUSTIN_PROCESSORS} 
export MKL_NUM_THREADS=${JUSTIN_PROCESSORS} 
export NUMEXPR_NUM_THREADS=${JUSTIN_PROCESSORS} 
export OMP_NUM_THREADS=${JUSTIN_PROCESSORS}  

#
echo "Will use justin-get-file"

now=$(date -u +"%Y%m%dT%H%M%SZ")


for nf in {1..10}
  do
  DID_PFN_RSE=`$JUSTIN_PATH/justin-get-file` 
 ##Check that any file was returned
 if [ "${DID_PFN_RSE}" == "" ] ; then
   echo "Could not get file"
#   exit 0
   continue
 fi

FILE=`echo ${DID_PFN_RSE} | cut -f2 -d' '`
DID=`echo ${DID_PFN_RSE} | cut -f1 -d' '`
 echo ${DID} >> did.list
 echo ${FILE} >> file.list 
done

#Exit if file.list does not exist
if [ ! -f file.list ] ; then
  echo "Nothing to process - exit jobscript"
  exit 0
fi


now=$(date -u +"%Y%m%dT%H%M%SZ")
 
####Run cafmaker
 
echo "now run lar on these files"

cat file.list
cat did.list
 
# echo $FILE 
# lar -c  "${CAF_FCL}" "$FILE" 
lar -c  "${FCL_FILE}" -S file.list > caf_$now.log

larExit=$?
echo "lar exit code $larExit"

echo '=== Start last 100 lines of lar log file ==='
tail -100 caf_${now}.log
echo '=== End last 100 lines of lar log file ==='

if [ $larExit -eq 0 ] ; then
  # Success !
  echo "$pfn" > justin-processed-pfns.txt
  jobscriptExit=0
else
  # Oh :(
  jobscriptExit=1
fi

# echo "$FILE" > justin-processed-pfns.txt
  cat file.list > justin-processed-pfns.txt

  echo "processed files"
cat justin-processed-pfns.txt 

  cp justin-processed-pfns.txt caf_$now.pfns 
  cat did.list >> caf_$now.did
  cat file.list >> caf_$now.file
  cp caf.root caf_fd_hd_atmo_${JUSTIN_WORKFLOW_ID}_$now.root
#  cp caf.root.json caf_$now.root.json

ls -lRS

# Create compressed tar file with all log files 
tar zcf `echo "$JUSTIN_JOBSUB_ID.logs.tgz" | sed 's/@/_/g'` *.log
exit $jobscriptExit