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Workflow 655, Stage 1

Priority50
Processors1
Wall seconds80000
Image/cvmfs/singularity.opensciencegrid.org/fermilab/fnal-wn-sl7:latest
RSS bytes4194304000 (4000 MiB)
Max distance for inputs3000.0
Enabled input RSEs CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, MONTECARLO, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled output RSEs CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled sites BR_CBPF, CA_SFU, CERN, CH_UNIBE-LHEP, CZ_FZU, ES_CIEMAT, ES_PIC, FR_CCIN2P3, IT_CNAF, NL_NIKHEF, NL_SURFsara, UK_Bristol, UK_Brunel, UK_Durham, UK_Edinburgh, UK_Glasgow, UK_Imperial, UK_Lancaster, UK_Liverpool, UK_Manchester, UK_Oxford, UK_QMUL, UK_RAL-PPD, UK_RAL-Tier1, UK_Sheffield, US_Colorado, US_FNAL-FermiGrid, US_FNAL-T1, US_Michigan, US_PuertoRico, US_SU-ITS, US_Swan, US_UChicago, US_UConn-HPC, US_UCSD, US_Wisconsin
Scopeusertests
Events for this stage

Output patterns

 DestinationPatternLifetimeFor next stageRSE expression
1https://fndcadoor.fnal.gov:2880/dune/scratch/users/ichong/fnal/00655/1*caf.root

Environment variables

NameValue
CODE_TAR_DIR_LOCAL/cvmfs/fifeuser3.opensciencegrid.org/sw/dune/1f8f8aaded68cc7c3e873196b083ca84b933f518
DUNE_QUALIFIERe26:prof
DUNE_VERSIONv10_04_06d00
FCL_FILE/cvmfs/fifeuser1.opensciencegrid.org/sw/dune/25a0930ee72638aea0976ae984b5af83bea98ca9/atm-reco_truth_vtx.fcl
FCL_SECONDARYcafmaker_atmos_dune10kt_1x2x6_runreco-nuenergy-nuangular_geov5.fcl
NUM_EVENTS10
XML_MASTER/cvmfs/fifeuser1.opensciencegrid.org/sw/dune/25a0930ee72638aea0976ae984b5af83bea98ca9/PandoraSettings_Master_Atmos_Production.xml
XML_NEUTRINO/cvmfs/fifeuser1.opensciencegrid.org/sw/dune/25a0930ee72638aea0976ae984b5af83bea98ca9/PandoraSettings_Neutrino_Atmos_Production.xml

File states

Total filesFindingUnallocatedAllocatedOutputtingProcessedNot foundFailed
1000000010999

Job states

TotalSubmittedStartedProcessingOutputtingFinishedNotusedAbortedStalledJobscript errorOutputting failedNone processed
734900001346055488736800
Files processed000.10.10.20.20.30.30.40.40.50.50.60.60.70.70.80.80.90.911Aug-07 19:00Aug-07 20:00Aug-07 21:00Files processedBin start timesNumber per binNL_SURFsara
Replicas per RSE1000479.24644985832174198.811476437343541000325.0858558893287323.84724134102515117281.149182228863197.7149365995115110294.97831601208793171.87590441817594102313.8702260189914152.0552442604121499335.9357156040915138.363036221989590359.15536357228746130.7837651713816723373.6570623398475128.8912128229070513378.316232221664128.7134627501282Replicas per RSEFNAL_DCACHE (39%)PRAGUE (39%)NIKHEF (4%)SURFSARA (4%)RAL_ECHO (3%)QMUL (3%)RAL-PP (3%)DUNE_FR_CCIN2P3_DISK (0%)DUNE_ES_PIC (0%)

RSEs used

NameInputsOutputs
PRAGUE28730
NIKHEF6430
SURFSARA6050
RAL_ECHO5950
QMUL5840
RAL-PP5370
DUNE_FR_CCIN2P3_DISK1100
DUNE_ES_PIC480
None02

Stats of processed input files as CSV or JSON, and of uploaded output files as CSV or JSON (up to 10000 files included)

File reset events, by site

SiteAllocatedOutputting
UK_Manchester12420
NL_SURFsara8440
US_FNAL-FermiGrid6500
UK_QMUL5210
CZ_FZU3020
UK_RAL-Tier12990
UK_RAL-PPD2230
UK_Durham1090
CERN1080
NL_NIKHEF910
US_UCSD780
US_UChicago630
ES_PIC570
UK_Oxford510
UK_Lancaster210
US_Wisconsin110
UK_Edinburgh110
IT_CNAF110
UK_Glasgow100
BR_CBPF20
US_FNAL-T110

Jobscript

#!/bin/bash
:<<'EOF'
This jobscript generates CaloHitList-based graph data 
from input reco2 ROOT files using your custom LArSoft setup.

Required environment variables:
  - FCL_FILE
  - CODE_TAR_DIR_LOCAL
  - DUNE_VERSION
  - DUNE_QUALIFIER
  - XML_MASTER
  - XML_NEUTRINO
  - NUM_EVENTS (optional)
  - FCL_SECONDARY (optional)
  - FCL_THIRD (optional)
EOF

# === Setup FCL and version info ===
FCL_FILE=${FCL_FILE:-atm-training-extract.fcl}
DUNE_VERSION=${DUNE_VERSION:-v10_04_06d00}
DUNE_QUALIFIER=${DUNE_QUALIFIER:-e26:prof}

# === Number of events option ===
if [ -n "$NUM_EVENTS" ]; then
  events_option="-n $NUM_EVENTS"
fi

# === Get a file from justIN ===
did_pfn_rse=$($JUSTIN_PATH/justin-get-file)
if [ -z "$did_pfn_rse" ]; then
  echo "No file assigned. Exiting jobscript."
  exit 0
fi

# === Track input DID for MetaCat ===
echo "$did_pfn_rse" | cut -f1 -d' ' >> all-input-dids.txt

# === Parse PFN from DID ===
pfn=$(echo "$did_pfn_rse" | cut -d' ' -f2)
echo "Input PFN = $pfn"

# === Setup DUNE software ===
source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh
setup dunesw "$DUNE_VERSION" -q "$DUNE_QUALIFIER"

# === Mirror CODE_TAR_DIR_LOCAL ===
INPUT_TAR_DIR_LOCAL="$CODE_TAR_DIR_LOCAL"
echo "INPUT_TAR_DIR_LOCAL = $INPUT_TAR_DIR_LOCAL"

# === Setup custom code ===
if [ -n "$CODE_TAR_DIR_LOCAL" ]; then
  echo "Using local products from $CODE_TAR_DIR_LOCAL"
  source "$CODE_TAR_DIR_LOCAL/truth_vtx_larsoft/localProducts_larsoft_v10_04_06d00_e26_prof/setup-grid"
  mrbslp
fi

# === Generate common timestamp and random suffix for output renaming ===
timestamp=$(date -u +"%Y-%m-%dT_%H%M%SZ")
rand_suffix=$((1 + RANDOM % 10))

# === Output file naming ===
fname=$(basename "$pfn" .root)
outFile="${fname}_truthvtx_${timestamp}.root"
logFile="${fname}_truthvtx_${timestamp}.log"

# === Set FW search path ===
XML_DIR_MASTER=$(dirname "$XML_MASTER")
XML_DIR_NEUTRINO=$(dirname "$XML_NEUTRINO")
export FW_SEARCH_PATH="$XML_DIR_MASTER:$XML_DIR_NEUTRINO:$FW_SEARCH_PATH"

# === Run lar (primary) ===
export LD_PRELOAD=${XROOTD_LIB}/libXrdPosixPreload.so
echo "Running LArSoft with FCL: $FCL_FILE"
lar -c "$FCL_FILE" $events_option -o "$outFile" "$pfn" > "$logFile" 2>&1
larExit=$?


###################run caf ###################

if [ -n "$FCL_SECONDARY" ]; then
  caf_timestamp=$(date -u +"%Y-%m-%dT_%H%M%SZ")
  secondary_out="caf_${fname}_truthvtx_${caf_timestamp}.root"
  secondary_log="caf_${fname}_truthvtx_${caf_timestamp}.log"
  echo "Running CAF step with FCL_SECONDARY: $FCL_SECONDARY using reco output: $outFile"
  lar -c "$FCL_SECONDARY" $events_option -o "$secondary_out" "$outFile" > "$secondary_log" 2>&1

  # === Rename CAF output root file to include timestamp if needed ===
  new_caf_out="caf_${fname}_truthvtx_${caf_timestamp}_caf.root"
  mv caf.root "$new_caf_out"
  echo "Renamed caf.root -> $new_caf_out"

fi

# # === Run lar (third) if needed ===
# if [ -n "$FCL_THIRD" ]; then
#   third_out="third_${outFile}"
#   third_log="third_${logFile}"
#   echo "Running LArSoft with third FCL: $FCL_THIRD"
#   lar -c "$FCL_THIRD" $events_option "$pfn" > "$third_log" 2>&1
# fi

# if [ -f "$third_log" ]; then
#   echo '=== Start last 100 lines of third lar log file ==='
#   tail -100 "$third_log"
#   echo '=== End last 100 lines of third lar log file ==='
# fi

# === Rename .data and .root files with timestamp and suffix ===
# if [ $larExit -eq 0 ]; then
#   # Rename .data files
#   for f in *.data; do
#     if [ -f "$f" ]; then
#       newname="graph_output_${timestamp}_${rand_suffix}_$f"
#       mv -f "$f" "$newname"
#       echo "Renamed $f -> $newname"
#     fi
#   done

#   # Rename *eid.root files
#   for f in *eid.root; do
#     if [ -f "$f" ]; then
#       newname="graph_output_${timestamp}_${rand_suffix}_$f"
#       mv -f "$f" "$newname"
#       echo "Renamed $f -> $newname"
#     fi
#   done

#   # Rename ana_tree_hd.root
#   if [ -f ana_tree_hd.root ]; then
#     newname="graph_output_${timestamp}_${rand_suffix}_ana_tree_hd.root"
#     mv ana_tree_hd.root "$newname"
#     echo "Renamed ana_tree_hd.root -> $newname"
#   fi

#   echo "$pfn" > justin-processed-pfns.txt
#   jobscriptExit=0
# else
#   jobscriptExit=1
# fi





# === Show lar log tail ===
echo '=== Start last 100 lines of lar log file ==='
tail -100 "$logFile"
echo '=== End last 100 lines of lar log file ==='

# === Mark processed ===
if [ $larExit -eq 0 ]; then
  echo "$pfn" > justin-processed-pfns.txt
  jobscriptExit=0
else
  jobscriptExit=1
fi

# === Package logs ===
tar zcf "${JUSTIN_JOBSUB_ID//[@]/_}.logs.tgz" *.log

# === Display output summary ===
echo "=== Generated output files ==="
ls -1 *.* 2>/dev/null | grep -v 'all-input-dids.txt' || echo "No output files found."

exit $jobscriptExit
# === Package logs ===
tar zcf "${JUSTIN_JOBSUB_ID//[@]/_}.logs.tgz" *.log

# === Display output summary ===
echo "=== Generated output files ==="
ls -1 *.* 2>/dev/null | grep -v 'all-input-dids.txt' || echo "No output files found."

exit $jobscriptExit
justIN time: 2025-09-01 01:09:52 UTC       justIN version: 01.04.01