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Workflow 8060, Stage 1

Priority50
Processors1
Wall seconds80000
Image/cvmfs/singularity.opensciencegrid.org/fermilab/fnal-wn-sl7:latest
RSS bytes8387559424 (7999 MiB)
Max distance for inputs30.0
Enabled input RSEs CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, MONTECARLO, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled output RSEs CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled sites BR_CBPF, CA_SFU, CERN, CH_UNIBE-LHEP, CZ_FZU, ES_CIEMAT, ES_PIC, FR_CCIN2P3, IT_CNAF, NL_NIKHEF, NL_SURFsara, UK_Bristol, UK_Brunel, UK_Durham, UK_Edinburgh, UK_Glasgow, UK_Lancaster, UK_Liverpool, UK_Manchester, UK_Oxford, UK_QMUL, UK_RAL-PPD, UK_RAL-Tier1, UK_Sheffield, US_Colorado, US_FNAL-FermiGrid, US_FNAL-T1, US_Michigan, US_PuertoRico, US_SU-ITS, US_Swan, US_UChicago, US_UConn-HPC, US_UCSD, US_Wisconsin
Scopeusertests
Events for this stage

Output patterns

 DestinationPatternLifetimeFor next stageRSE expression
1Rucio usertests:calcuttj_PDHD_PDS-fnal-w8060s1p1*TPC6.root7776000False

Environment variables

NameValue
DUNESW_VERSIONv10_10_04d00
NEVENTS-1
pipyaml1
SetRun1
UTIL_TAR/cvmfs/fifeuser2.opensciencegrid.org/sw/dune/7fbd453a95b1884650a8ddbdfc8ca1ef86d21f87
YAMLFILEpdhd_beam_gen_5GeV_PD.yaml

File states

Total filesFindingUnallocatedAllocatedOutputtingProcessedNot foundFailed
1690370013101

Job states

TotalSubmittedStartedProcessingOutputtingFinishedNotusedAbortedStalledJobscript errorOutputting failedNone processed
696000062451119001
Files processed00101020203030404050506060707080809090Sep-25 16:00Sep-25 17:00Sep-25 18:00Sep-25 19:00Sep-25 20:00Sep-25 21:00Sep-25 22:00Sep-25 23:00Sep-26 00:00Sep-26 01:00Sep-26 02:00Sep-26 03:00Sep-26 04:00Sep-26 05:00Sep-26 06:00Files processedBin start timesNumber per binUK_DurhamUK_QMULUS_FNAL-FermiG…US_FNAL-FermiGridCERNIT_CNAFUK_GlasgowCZ_FZU
Replicas per RSE48461.9769948359642167.9101950550291337445.3250134619982316.5877267890923628325.94370302547725324.365960169757523275.0682107566802242.798272909810416295.6230938066689171.002954821342579332.8062443606818139.867968105132668364.3980264961786129.86226225432947Replicas per RSEDUNE_CERN_EOS (28%)SURFSARA (21%)PRAGUE (16%)DUNE_US_BNL_SDCC (13%)DUNE_IT_INFN_CNAF (9%)DUNE_US_FNAL_DISK_STAGE (5%)DUNE_UK_MANCHESTER_CEPH (4%)

RSEs used

NameInputsOutputs
DUNE_CERN_EOS486
PRAGUE2811
DUNE_US_BNL_SDCC250
DUNE_IT_INFN_CNAF2166
DUNE_US_FNAL_DISK_STAGE1532
DUNE_UK_MANCHESTER_CEPH80
QMUL012
DUNE_UK_GLASGOW04

Stats of processed input files as CSV or JSON, and of uploaded output files as CSV or JSON (up to 10000 files included)

File reset events, by site

SiteAllocatedOutputting
US_FNAL-FermiGrid60
IT_CNAF50
US_Wisconsin02

Jobscript

#!/bin/bash
#

#These must be defined
if [ -z $UTIL_TAR ]; then
  echo "Fatal must provide UTIL_TAR env var"
  exit 1
fi
export PYTHONPATH=$UTIL_TAR:$PYTHONPATH

source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh
setup metacat
export METACAT_SERVER_URL=https://metacat.fnal.gov:9443/dune_meta_prod/app
export METACAT_AUTH_SERVER_URL=https://metacat.fnal.gov:8143/auth/dune

if [ -z ${JUSTIN_PROCESSORS} ]; then
  JUSTIN_PROCESSORS=1
fi

echo "Justin processors: ${JUSTIN_PROCESSORS}"

export TF_NUM_THREADS=${JUSTIN_PROCESSORS}   
export OPENBLAS_NUM_THREADS=${JUSTIN_PROCESSORS} 
export JULIA_NUM_THREADS=${JUSTIN_PROCESSORS} 
export MKL_NUM_THREADS=${JUSTIN_PROCESSORS} 
export NUMEXPR_NUM_THREADS=${JUSTIN_PROCESSORS} 
export OMP_NUM_THREADS=${JUSTIN_PROCESSORS}  

echo "Justin specific env vars"
env | grep JUSTIN
now=$(date -u +"%Y%m%dT%H%M%SZ")
jobid=`echo "${JUSTIN_JOBSUB_ID:-1}" | cut -f1 -d'@' | sed -e "s/\./_/"`
stageid=${JUSTIN_STAGE_ID:-1}
a=1
 if [ -n "$DUNESW_TAR" ]; then
   stat ${DUNESW_TAR}
   if [ $? -ne 0 ]; then
     echo "Failed to stat $DUNESW_TAR. Exiting safely"
     exit 0
   fi
 
   export PRODUCTS=$DUNESW_TAR:$PRODUCTS 
   echo "Set dunesw to $DUNESW_TAR"
 fi

 if [ -n "$WIRECELL_TAR" ]; then
   stat ${WIRECELL_TAR}
   if [ $? -ne 0 ]; then
     echo "Failed to stat $WIRECELL_TAR. Exiting safely"
     exit 0
   fi
 
   export PRODUCTS=$WIRECELL_TAR:$PRODUCTS 
   echo "Set wirecell to $WIRECELL_TAR"
 fi

 #Setup recent lar software suite
 DUNESW_VERSION=${DUNESW_VERSION:-v10_02_02d00}
 setup dunesw \
    "${DUNESW_VERSION}" \
    -q "${DUNE_QUALIFIER:-e26:prof}"
 
 setup_exit=$?
 if [ $? -ne 0 ]; then
   echo "Failed to setup dunesw $DUNESW_VERSION $DUNE_QUALIFIER"
   exit $setup_exit
 fi
 
 echo "DUNESW loc:"
 ups active | grep dunesw

 echo "WIRECELL loc:"
 ups active | grep wirecell
 

 if [ -n "$extra_fcl_path" ]; then
   export FHICL_FILE_PATH=${extra_fcl_path}:${FHICL_FILE_PATH}
   echo "Added ${extra_fcl_path} to fhicl file path"
   echo "${FHICL_FILE_PATH}"
 fi
 
 echo "printing env"
 env
 echo "DUNE specific env vars"
 env | grep DUNE

# User can specify to pip install pyyaml
if [ -n "$pipyaml" ]; then
  echo "Installing yaml"
  pip install --user pyyaml
  echo "Done"
# elif [ -n "${YAML_TAR}" ]; then
#   echo "Using venv at ${YAML_TAR}"
#   source ${YAML_TAR}/yaml_venv/bin/activate
fi


 echo "Will use justin-get-file"
 DID_PFN_RSE=`$JUSTIN_PATH/justin-get-file`
 if [ "${DID_PFN_RSE}" == "" ] ; then
   echo "Could not get file"
   exit 0
 fi
 pfn=`echo ${DID_PFN_RSE} | cut -f2 -d' '`
 did=`echo ${DID_PFN_RSE} | cut -f1 -d' '`
 
 input_filename=`echo $did | cut -f2 -d':'`
 echo "input file: $input_filename"

 echo "jobsub_id: ${JUSTIN_JOBSUB_ID:-1}"
 
 #Get run/subrun from parent if using input -- else from justin job ID/process"
 if [ -z "$SetRun" ]; then
   echo "Getting run subrun from $did"
   run_subrun=`python -m beam_job_utils get_run_subrun -i $did`
   get_run_ret=$?
   if [ $get_run_ret -ne 0 ]; then
     echo "error in get_run_subrun"
   fi
 
   echo $run_subrun
   run=`echo $run_subrun | cut -f1 -d' '`
   subrun=`echo $run_subrun | cut -f2 -d' '`
 else
   run=`echo $jobid | cut -f1 -d'_'`  ##TODO -- check order here
   subrun=`echo $jobid | cut -f2 -d'_'`
 fi
 nevents=${NEVENTS:--1} #Set from env override or -1 
 NSKIP=${NSKIP:-0} 
 echo "nevents: $nevents"
 
 overrides="core.data_tier=full-reconstructed \
  core.application.version=${DUNESW_VERSION} \
  core.application.name=reco \
  core.application.family=dunesw \
  core.application=dunesw.reco \
 "

#User specifies if they'd like to use an input file or not 
if [ -n "$MCJob" ]; then
  inputflag=""
else
  inputflag="-i $pfn --parent $did"
fi

echo "input flag: $inputflag"

if [[ $pfn == *.hdf5 ]]; then
  echo "Setting LD_PRELOAD"  
  export LD_PRELOAD=$XROOTD_LIB/libXrdPosixPreload.so
fi

# TODO -- metadata file configurable
python -m beam_job_utils run_job \
      --json ${UTIL_TAR}/${JSONFILE:-pdsp_beam_base_meta.json} \
      --overrides ${overrides} \
      --run $run \
      --subrun $subrun \
      --yaml ${UTIL_TAR}/${YAMLFILE:-pdsp_beam_gen.yaml} \
      --nevents $nevents \
      $(if [ ${NSKIP} -ne 0 ]; then echo "--event ${NSKIP}"; fi) \
      $inputflag

exitcode=$?
if [ $exitcode -ne 0 ]; then
  echo "Error running. Exiting with ${exitcode}"
  exit $exitcode
fi

echo "lsing"
ls -lhS
echo "disk usage"
du -sh .

echo "$pfn" > justin-processed-pfns.txt
justIN time: 2025-11-05 09:41:53 UTC       justIN version: 01.05.01