Workflow 8861, Stage 1

Priority	50
Processors	1
Wall seconds	80000
Image	/cvmfs/singularity.opensciencegrid.org/fermilab/fnal-wn-sl7:latest
RSS bytes	2097152000 (2000 MiB)
Max distance for inputs	30.0
Enabled input RSEs	CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, MONTECARLO, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled output RSEs	CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled sites	BR_CBPF, CA_SFU, CERN, CH_UNIBE-LHEP, CZ_FZU, ES_CIEMAT, ES_PIC, FR_CCIN2P3, IT_CNAF, NL_NIKHEF, NL_SURFsara, UK_Bristol, UK_Brunel, UK_Durham, UK_Edinburgh, UK_Lancaster, UK_Liverpool, UK_Manchester, UK_Oxford, UK_QMUL, UK_RAL-PPD, UK_RAL-Tier1, UK_Sheffield, US_Colorado, US_FNAL-FermiGrid, US_FNAL-T1, US_Michigan, US_PuertoRico, US_SU-ITS, US_Swan, US_UChicago, US_UConn-HPC, US_UCSD, US_Wisconsin
Scope	usertests
Events for this stage

Output patterns

	Destination	Pattern	Lifetime	For next stage	RSE expression
1	https://fndcadoor.fnal.gov:2880/dune/scratch/users/calcuttj/beam_inst_pdhd/fnal/08861/1	beamroot

Environment variables

Name	Value
nevents	-1
NFILES	20

File states

Total files	Finding	Unallocated	Allocated	Outputting	Processed	Not found	Failed
100	0	0	0	0	0	0	100

Job states

Total	Submitted	Started	Processing	Outputting	Finished	Notused	Aborted	Stalled	Jobscript error	Outputting failed	None processed
835	0	0	0	0	717	0	1	12	105	0	0

RSEs used

Name	Inputs	Outputs
DUNE_CERN_EOS	600	0

Stats of processed input files as CSV or JSON, and of uploaded output files as CSV or JSON (up to 10000 files included)

File reset events, by site

Site	Allocated	Outputting
NL_NIKHEF	26	0
UK_RAL-Tier1	3	0
UK_QMUL	1	0

Jobscript

#!/bin/sh
#
# Example jobscript that runs lar for all the files
# referred to by the MQL expression given on the justin command line.
#
# Submit with something like this:
#
# ./justin simple-workflow \
#  --max-distance 30 \
#  --mql "rucio-dataset protodune-sp:np04_raw_run_number_5769" \
#  --jobscript lar.jobscript
#
# Then monitor with dashboard or ./justin show-jobs --workflow-id ID
# where ID is the value printed by the first command
#


# the xroot lib for streaming non-root files is in testproducts, 
# so add it to the start of the path
source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh
if [ -z ${JUSTIN_PROCESSORS} ]; then
  JUSTIN_PROCESSORS=1
fi

echo "Justin processors: ${JUSTIN_PROCESSORS}"

export TF_NUM_THREADS=${JUSTIN_PROCESSORS}   
export OPENBLAS_NUM_THREADS=${JUSTIN_PROCESSORS} 
export JULIA_NUM_THREADS=${JUSTIN_PROCESSORS} 
export MKL_NUM_THREADS=${JUSTIN_PROCESSORS} 
export NUMEXPR_NUM_THREADS=${JUSTIN_PROCESSORS} 
export OMP_NUM_THREADS=${JUSTIN_PROCESSORS}  

# From jobsub
export CLUSTER=${CLUSTER:-1}
export PROCESS=${PROCESS:-1}

setup dunesw ${DUNESW_VERSION:-v10_10_04d00} -q e26:prof
setup_exit=$?
if [ "$setup_exit" != 0 ]; then
  echo "Error setting up dunesw ${DUNESW_VERSION}"
  exit
fi

export RUCIO_ACCOUNT=justinreadonly

if [ -n "${extra_fcl_path}" ]; then
  echo "ADDING ${extra_fcl_path} to fcl file path"
  sleep 1
  export FHICL_FILE_PATH=${extra_fcl_path}:${FHICL_FILE_PATH}
fi

# Get an unprocessed file from this stage
#did_pfn_rse=`$JUSTIN_PATH/justin-get-file`
#if [ "${did_pfn_rse}" == "" ] ; then
#  echo "Could not get file"
#  exit 0
#fi
#
#did=`echo $did_pfn_rse | cut -f1 -d' '`
#pfn=`echo $did_pfn_rse | cut -f2 -d' '`
#rse=`echo $did_pfn_rse | cut -f3 -d' '`
#name_only=$(echo $did | cut -f2 -d':')
#echo "name" $name_only

NFILES=${NFILES:-1}
files=()
nfiles=0
#if [ $NFILES -eq 1 ]; then
#  echo "Will use justin-get-file"
#  DID_PFN_RSE=`$JUSTIN_PATH/justin-get-file`
#  if [ "${DID_PFN_RSE}" == "" ] ; then
#    echo "Could not get file"
#    exit 0
#  fi
#  export pfn=`echo ${DID_PFN_RSE} | cut -f2 -d' '`
#  export did=`echo ${DID_PFN_RSE} | cut -f1 -d' '`
#
#  if [ -z ${TESTFILE} ]; then
#    files+=($pfn)
#  else
#    files+=(${TESTFILE})
#  fi
#
if [ -n "${TESTFILE}" ]; then
  echo "Using testfile"
  files+=(${TESTFILE})
  nfiles=1
else
  nfiles=0
  for i in `seq 1 ${NFILES:-1}`; do
    echo $i
    DID_PFN_RSE=`$JUSTIN_PATH/justin-get-file`

    if [ "${DID_PFN_RSE}" == "" ] ; then
      echo "Could not get file -- exiting loop"
      break
    fi

    echo "did_pfn_rse: ${DID_PFN_RSE}"

    THISFILE=`echo ${DID_PFN_RSE} | cut -f2 -d' '`

    echo $THISFILE
    files+=(${THISFILE})
    nfiles=$(( nfiles + 1 ))
  done
fi

echo "Got $nfiles Files"
echo ${files[@]}

if [[ $nfiles == 0 ]]; then
  echo "No files exiting"
  exit 0
fi

echo "Found input file URL $pfn at $rse"

#Get the stage and momentum 
export stage=${stage:-"Gen"}
export momentum=${momentum:-1}

beam_fcl="run_pdhd_beamevent.fcl"

now=$(date -u +"%Y%m%dT%H%M%SZ")
jobid=`echo "${JUSTIN_JOBSUB_ID:-1}" | cut -f1 -d'@' | sed -e "s/\./_/"`
stageid=${JUSTIN_STAGE_ID:-1}
output_preamble="pdhd_prod_beam_"

nevents=${nevents:--1}
nskip=${nskip:-0}
echo "XROOTD: $XROOTD_LIB"
#Generation
LD_PRELOAD=$XROOTD_LIB/libXrdPosixPreload.so lar \
    -n  ${nevents} \
    --nskip ${nskip} \
    -c  ${beam_fcl} \
    -o  pdhd_${jobid}_${stageid}_${now}_beam.root \
    -T pdhd_${jobid}_${stageid}_${now}_beam_hist.root \
    -S $files

larReturnCode=$?
echo "gen lar returns $larReturnCode"
if [ "$larReturnCode" != 0 ] ; then
  exit $larReturnCode
fi
#Generation Done

####EDIT METADATA FOR THE FOLLOWING FILE
#${name_only}_${jobid}_${stageid}_${now}_detsim_reco1.root

# Record that we processed the input file ok (did we???)
#echo "$pfn" > justin-processed-pfns.txt
for i in ${files[@]}; do
  echo "${i}" >> justin-processed-pfns.txt
done

# For debugging
for i in *.json
do
  echo "==== Start $i ===="
  cat $i
  echo "==== End $i ===="
done

ls -ltR

exit 0