Workflow 9345, Stage 1

Priority	50
Processors	1
Wall seconds	6000
Image	/cvmfs/singularity.opensciencegrid.org/fermilab/fnal-wn-sl7:latest
RSS bytes	4194304000 (4000 MiB)
Max distance for inputs	30.0
Enabled input RSEs	CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, MONTECARLO, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled output RSEs	CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled sites	BR_CBPF, CA_SFU, CERN, CH_UNIBE-LHEP, CZ_FZU, ES_CIEMAT, ES_PIC, FR_CCIN2P3, IT_CNAF, NL_NIKHEF, NL_SURFsara, UK_Bristol, UK_Brunel, UK_Durham, UK_Edinburgh, UK_Lancaster, UK_Liverpool, UK_Manchester, UK_Oxford, UK_QMUL, UK_RAL-PPD, UK_RAL-Tier1, UK_Sheffield, US_Colorado, US_FNAL-FermiGrid, US_FNAL-T1, US_Michigan, US_PuertoRico, US_SU-ITS, US_Swan, US_UChicago, US_UConn-HPC, US_UCSD, US_Wisconsin
Scope	usertests
Events for this stage

Output patterns

	Destination	Pattern	Lifetime	For next stage	RSE expression
1	Rucio usertests:fnal-w9345s1p1	*.root	604800	False

Environment variables

Name	Value
INPUT_TAR_DIR_LOCAL	/cvmfs/fifeuser1.opensciencegrid.org/sw/dune/2986ecbebe0ab12671f325bfece4846ea20a4119
NUM_EVENTS	10

File states

Total files	Finding	Unallocated	Allocated	Outputting	Processed	Not found	Failed
1	0	1	0	0	0	0	0

Job states

Total	Submitted	Started	Processing	Outputting	Finished	Notused	Aborted	Stalled	Jobscript error	Outputting failed	None processed
0	0	0	0	0	0	0	0	0	0	0	0

Stats of processed input files as CSV or JSON, and of uploaded output files as CSV or JSON (up to 10000 files included)

Jobscript

#!/bin/bash
:<<'EOF'

The following optional environment variables can be set when creating the
workflow/stage: FCL_FILE, NUM_EVENTS, DUNE_VERSION, DUNE_QUALIFIER

EOF

# fcl file and DUNE software version/qualifier to be used
ANA_FILE=QLMatchAna.fcl
NUM_EVENTS=2
DUNE_VERSION=${DUNE_VERSION:-v09_91_04d01}
DUNE_QUALIFIER=${DUNE_QUALIFIER:-e26:prof}

# number of events to process from the input file
if [ "$NUM_EVENTS" != "" ] ; then
 events_option="-n $NUM_EVENTS"
fi

# First get an unprocessed file from this stage
did_pfn_rse=`$JUSTIN_PATH/justin-get-file`

if [ "$did_pfn_rse" = "" ] ; then
  echo "Nothing to process - exit jobscript"
  exit 0
fi

echo "did_pfn_rse: $did_pfn_rse"

# Keep a record of all input DIDs, for pdjson2meta file -> DID mapping
echo "$did_pfn_rse" | cut -f1 -d' ' >>all-input-dids.txt

# pfn is also needed when creating justin-processed-pfns.txt
pfn=`echo $did_pfn_rse | cut -f2 -d' '`
echo "Input PFN = $pfn"

# Setup DUNE environment
source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh
export PRODUCTS="${INPUT_TAR_DIR_LOCAL}/localProducts_larsoft_v09_91_04_01_e26_prof/:$PRODUCTS" #working
setup dunesw "$DUNE_VERSION" -q "$DUNE_QUALIFIER"

# need this to let lar find the analyzer lib
#export CET_PLUGIN_PATH="${INPUT_TAR_DIR_LOCAL}/build_slf7.x86_64/QLMatching/slf7.x86_64.e26.prof/lib:${INPUT_TAR_DIR_LOCAL}/build_slf7.x86_64/dunereco/slf7.x86_64.e26.prof/lib:$CET_PLUGIN_PATH"
export CET_PLUGIN_PATH="${INPUT_TAR_DIR_LOCAL}/build_slf7.x86_64/QLMatching/slf7.x86_64.e26.prof/lib:$CET_PLUGIN_PATH"
#export LD_LIBRARY_PATH="${INPUT_TAR_DIR_LOCAL}/build_slf7.x86_64/dunereco/slf7.x86_64.e26.prof/lib:${INPUT_TAR_DIR_LOCAL}/build_slf7.x86_64/QLMatching/slf7.x86_64.e26.prof/lib:$LD_LIBRARY_PATH"

# check Symlink
echo "check symbolic links of ${INPUT_TAR_DIR_LOCAL}/build_slf7.x86_64/QLMatching/slf7.x86_64.e26.prof/lib/libQLMatchAna_module.so: "
ldd ${INPUT_TAR_DIR_LOCAL}/build_slf7.x86_64/QLMatching/slf7.x86_64.e26.prof/lib/libQLMatchAna_module.so

echo "Redo the symlink"
ln -sf ${INPUT_TAR_DIR_LOCAL}/build_slf7.x86_64/dunereco/slf7.x86_64.e26.prof/lib/libdune_BlipRecoAlg.so libdune_BlipRecoAlg.so
# May need to update for libdune_BlipUtils.so as well??

# check link
echo "check redo symbolic links: "
ldd ${INPUT_TAR_DIR_LOCAL}/build_slf7.x86_64/QLMatching/slf7.x86_64.e26.prof/lib/libQLMatchAna_module.so

# It IS IMPORTANT TO PUT ALL CUSTOMIZED FCL FILES IN INPUT_TAR_DIR_LOCAL
export FHICL_FILE_PATH=${INPUT_TAR_DIR_LOCAL}:${FHICL_FILE_PATH}
export FW_SEARCH_PATH=${INPUT_TAR_DIR_LOCAL}/config_data:$FW_SEARCH_PATH
export FW_SEARCH_PATH=${INPUT_TAR_DIR_LOCAL}:$FW_SEARCH_PATH
export OMP_NUM_THREADS=${JUSTIN_PROCESSORS}

# Construct outFile from input $pfn
now=$(date -u +"%Y-%m-%dT_%H%M%SZ")
Ffname=`echo $pfn | awk -F/ '{print $NF}'`
fname=`echo $Ffname | awk -F. '{print $1}'`
outAnaFile=${fname}_QLMatch_ana_${now}
campaign="justIN.w${JUSTIN_WORKFLOW_ID}s${JUSTIN_STAGE_ID}"

(
# Do the scary preload stuff in a subshell!
# be able to read a file from an xroot path
export LD_PRELOAD=${XROOTD_LIB}/libXrdPosixPreload.so
#echo "lar --print-description QLMatchAna"
#lar --print-description QLMatchAna
lar -c $ANA_FILE $events_option -T ${outAnaFile}_hist.root $pfn > ${fname}_myana_${now}.log 2>&1
)

# Subshell exits with exit code of last command
larExit=$?
echo "lar exit code $larExit"
echo "$pfn" > justin-processed-pfns.txt

# Create compressed tar file with all log files
tar zcf `echo "$JUSTIN_JOBSUB_ID.logs.tgz" | sed 's/@/_/g'` *.log
exit $jobscriptExit
#exit $larExit