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Workflow 9431, Stage 1

Priority50
Processors1
Wall seconds80000
Image/cvmfs/singularity.opensciencegrid.org/fermilab/fnal-wn-sl7:latest
RSS bytes6815744000 (6500 MiB)
Max distance for inputs30.0
Enabled input RSEs CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, MONTECARLO, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled output RSEs CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled sites BR_CBPF, CA_SFU, CERN, CH_UNIBE-LHEP, CZ_FZU, ES_CIEMAT, ES_PIC, FR_CCIN2P3, IT_CNAF, NL_NIKHEF, NL_SURFsara, UK_Bristol, UK_Brunel, UK_Durham, UK_Edinburgh, UK_Lancaster, UK_Liverpool, UK_Manchester, UK_Oxford, UK_QMUL, UK_RAL-PPD, UK_RAL-Tier1, UK_Sheffield, US_Colorado, US_FNAL-FermiGrid, US_FNAL-T1, US_Michigan, US_PuertoRico, US_SU-ITS, US_Swan, US_UChicago, US_UConn-HPC, US_UCSD, US_Wisconsin
Scopeusertests
Events for this stage

Output patterns

 DestinationPatternLifetimeFor next stageRSE expression
1https://fndcadoor.fnal.gov:2880/dune/scratch/users/drivera/lar1010/JustinTest/fnal/09431/1np04hd_raw*root

Environment variables

NameValue
DUNESW_TAR/cvmfs/fifeuser1.opensciencegrid.org/sw/dune/3b3dd185ef0a7de63b6b2ca059042a10935a1cdb
DUNESW_VERSIONv10_10_00d00
HDF5JOB1
NEVENTS-1
pipyaml1
UTIL_TAR/cvmfs/fifeuser3.opensciencegrid.org/sw/dune/da192e811f99beb9052ebf84feca1a26d8e9cf8b
YAMLFILElaser_campaign_2.yaml

File states

Total filesFindingUnallocatedAllocatedOutputtingProcessedNot foundFailed
53600157037900

Job states

TotalSubmittedStartedProcessingOutputtingFinishedNotusedAbortedStalledJobscript errorOutputting failedNone processed
42880015702139171187762116
Files processed002020404060608080100100120120140140160160180180200200220220240240Oct-29 03:00Oct-29 10:00Oct-29 17:00Oct-30 00:00Oct-30 07:00Oct-30 14:00Oct-30 21:00Oct-31 04:00Oct-31 11:00Oct-31 18:00Nov-01 01:00Nov-01 08:00Nov-01 15:00Nov-01 22:00Nov-02 05:00Nov-02 12:00Nov-02 19:00Nov-03 02:00Nov-03 09:00Nov-03 16:00Files processedBin start timesNumber per binUS_UChicagoNL_SURFsaraUK_ManchesterUK_RAL-PPDUK_DurhamUK_QMULUK_SheffieldUK_RAL-Tier1UK_BrunelES_PICUK_LancasterNL_NIKHEFCERNFR_CCIN2P3IT_CNAF
Replicas per RSE536490.025244.5528270.0052365082925247.079269160698748377.42073083930126134.5052365082925Replicas per RSEFNAL_DCACHE (50%)DUNE_IT_INFN_CNAF (49%)DUNE_CA_SFU (0%)

RSEs used

NameInputsOutputs
DUNE_IT_INFN_CNAF10300
DUNE_CA_SFU80
None0379

Stats of processed input files as CSV or JSON, and of uploaded output files as CSV or JSON (up to 10000 files included)

File reset events, by site

SiteAllocatedOutputting
NL_SURFsara1033
UK_Manchester940
UK_RAL-Tier1730
UK_QMUL670
NL_NIKHEF421
IT_CNAF241
ES_PIC170
UK_Sheffield152
FR_CCIN2P3120
UK_Durham100
UK_Lancaster90
UK_Brunel70
UK_Bristol30
CZ_FZU30
UK_RAL-PPD21
CERN10

Jobscript

#!/bin/bash
#

#These must be defined
if [ -z $UTIL_TAR ]; then
  echo "Fatal must provide UTIL_TAR env var"
  exit 1
fi
export PYTHONPATH=$UTIL_TAR:$PYTHONPATH

source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh
setup metacat
export METACAT_SERVER_URL=https://metacat.fnal.gov:9443/dune_meta_prod/app
export METACAT_AUTH_SERVER_URL=https://metacat.fnal.gov:8143/auth/dune

if [ -z ${JUSTIN_PROCESSORS} ]; then
  JUSTIN_PROCESSORS=1
fi

echo "Justin processors: ${JUSTIN_PROCESSORS}"

export TF_NUM_THREADS=${JUSTIN_PROCESSORS}   
export OPENBLAS_NUM_THREADS=${JUSTIN_PROCESSORS} 
export JULIA_NUM_THREADS=${JUSTIN_PROCESSORS} 
export MKL_NUM_THREADS=${JUSTIN_PROCESSORS} 
export NUMEXPR_NUM_THREADS=${JUSTIN_PROCESSORS} 
export OMP_NUM_THREADS=${JUSTIN_PROCESSORS}  

echo "Justin specific env vars"
env | grep JUSTIN
now=$(date -u +"%Y%m%dT%H%M%SZ")
jobid=`echo "${JUSTIN_JOBSUB_ID:-1}" | cut -f1 -d'@' | sed -e "s/\./_/"`
stageid=${JUSTIN_STAGE_ID:-1}
a=1
 if [ -n "$DUNESW_TAR" ]; then
   stat ${DUNESW_TAR}
   if [ $? -ne 0 ]; then
     echo "Failed to stat $DUNESW_TAR. Exiting safely"
     exit 0
   fi
 
   export PRODUCTS=$DUNESW_TAR:$PRODUCTS 
   echo "Set dunesw to $DUNESW_TAR"
 fi

 if [ -n "$WIRECELL_TAR" ]; then
   stat ${WIRECELL_TAR}
   if [ $? -ne 0 ]; then
     echo "Failed to stat $WIRECELL_TAR. Exiting safely"
     exit 0
   fi
 
   export PRODUCTS=$WIRECELL_TAR:$PRODUCTS 
   echo "Set wirecell to $WIRECELL_TAR"
 fi

 #Setup recent lar software suite
 DUNESW_VERSION=${DUNESW_VERSION:-v10_02_02d00}
 setup dunesw \
    "${DUNESW_VERSION}" \
    -q "${DUNE_QUALIFIER:-e26:prof}"
 
 setup_exit=$?
 if [ $? -ne 0 ]; then
   echo "Failed to setup dunesw $DUNESW_VERSION $DUNE_QUALIFIER"
   exit $setup_exit
 fi
 
 echo "DUNESW loc:"
 ups active | grep dunesw

 echo "WIRECELL loc:"
 ups active | grep wirecell
 

 if [ -n "$extra_fcl_path" ]; then
   export FHICL_FILE_PATH=${extra_fcl_path}:${FHICL_FILE_PATH}
   echo "Added ${extra_fcl_path} to fhicl file path"
   echo "${FHICL_FILE_PATH}"
 fi
 
 echo "printing env"
 env
 echo "DUNE specific env vars"
 env | grep DUNE

# User can specify to pip install pyyaml
if [ -n "$pipyaml" ]; then
  echo "Installing yaml"
  pip install --user pyyaml
  echo "Done"
# elif [ -n "${YAML_TAR}" ]; then
#   echo "Using venv at ${YAML_TAR}"
#   source ${YAML_TAR}/yaml_venv/bin/activate
fi


 echo "Will use justin-get-file"
 DID_PFN_RSE=`$JUSTIN_PATH/justin-get-file`
 if [ "${DID_PFN_RSE}" == "" ] ; then
   echo "Could not get file"
   exit 0
 fi
 pfn=`echo ${DID_PFN_RSE} | cut -f2 -d' '`
 did=`echo ${DID_PFN_RSE} | cut -f1 -d' '`
 
 input_filename=`echo $did | cut -f2 -d':'`
 echo "input file: $input_filename"

 echo "jobsub_id: ${JUSTIN_JOBSUB_ID:-1}"
 
 #Get run/subrun from parent if using input -- else from justin job ID/process"
 if [ -z "$SetRun" ]; then
   echo "Getting run subrun from $did"
   run_subrun=`python -m beam_job_utils get_run_subrun -i $did`
   get_run_ret=$?
   if [ $get_run_ret -ne 0 ]; then
     echo "error in get_run_subrun"
   fi
 
   echo $run_subrun
   run=`echo $run_subrun | cut -f1 -d' '`
   subrun=`echo $run_subrun | cut -f2 -d' '`
 else
   run=`echo $jobid | cut -f1 -d'_'`  ##TODO -- check order here
   subrun=`echo $jobid | cut -f2 -d'_'`
 fi
 nevents=${NEVENTS:--1} #Set from env override or -1 
 NSKIP=${NSKIP:-0} 
 echo "nevents: $nevents"
 
 overrides="core.data_tier=full-reconstructed \
  core.application.version=${DUNESW_VERSION} \
  core.application.name=reco \
  core.application.family=dunesw \
  core.application=dunesw.reco \
 "

#User specifies if they'd like to use an input file or not 
if [ -n "$MCJob" ]; then
  inputflag=""
else
  inputflag="-i $pfn --parent $did"
fi

echo "input flag: $inputflag"

if [[ $pfn == *.hdf5 ]]; then
  echo "Setting LD_PRELOAD"  
  export LD_PRELOAD=$XROOTD_LIB/libXrdPosixPreload.so
fi

# TODO -- metadata file configurable
python -m beam_job_utils run_job \
      --json ${UTIL_TAR}/${JSONFILE:-pdsp_beam_base_meta.json} \
      --overrides ${overrides} \
      --run $run \
      --subrun $subrun \
      --yaml ${UTIL_TAR}/${YAMLFILE:-pdsp_beam_gen.yaml} \
      --nevents $nevents \
      $(if [ ${NSKIP} -ne 0 ]; then echo "--event ${NSKIP}"; fi) \
      $inputflag

exitcode=$?
if [ $exitcode -ne 0 ]; then
  echo "Error running. Exiting with ${exitcode}"
  exit $exitcode
fi

echo "lsing"
ls -lhS
echo "disk usage"
du -sh .

echo "$pfn" > justin-processed-pfns.txt
justIN time: 2025-11-04 01:27:19 UTC       justIN version: 01.05.01