Workflow 9603, Stage 1

Priority	50
Processors	1
Wall seconds	12000
Image	/cvmfs/singularity.opensciencegrid.org/fermilab/fnal-wn-sl7:latest
RSS bytes	4194304000 (4000 MiB)
Max distance for inputs	30.0
Enabled input RSEs	CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, MONTECARLO, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled output RSEs	CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled sites	BR_CBPF, CA_SFU, CERN, CH_UNIBE-LHEP, CZ_FZU, ES_CIEMAT, ES_PIC, FR_CCIN2P3, IT_CNAF, NL_NIKHEF, NL_SURFsara, UK_Bristol, UK_Brunel, UK_Durham, UK_Edinburgh, UK_Lancaster, UK_Liverpool, UK_Manchester, UK_Oxford, UK_QMUL, UK_RAL-PPD, UK_RAL-Tier1, UK_Sheffield, US_Colorado, US_FNAL-FermiGrid, US_FNAL-T1, US_Michigan, US_PuertoRico, US_SU-ITS, US_Swan, US_UChicago, US_UConn-HPC, US_UCSD, US_Wisconsin
Scope	usertests
Events for this stage

Output patterns

	Destination	Pattern	Lifetime	For next stage	RSE expression
1	https://fndcadoor.fnal.gov:2880/dune/scratch/users/weishi/VDMarleyCCBkgAna/fnal/09603/1	*.root

Environment variables

Name	Value
INPUT_TAR_DIR_LOCAL	/cvmfs/fifeuser3.opensciencegrid.org/sw/dune/5154fc09b0e0595acdeef158c378915bfc1b8801
NUM_EVENTS	-1

File states

Total files	Finding	Unallocated	Allocated	Outputting	Processed	Not found	Failed
1	0	0	0	0	0	0	1

Job states

Total	Submitted	Started	Processing	Outputting	Finished	Notused	Aborted	Stalled	Jobscript error	Outputting failed	None processed
12	0	0	0	0	6	0	6	0	0	0	0

RSEs used

Name	Inputs	Outputs
DUNE_US_FNAL_DISK_STAGE	6	0

Stats of processed input files as CSV or JSON, and of uploaded output files as CSV or JSON (up to 10000 files included)

File reset events, by site

Site	Allocated	Outputting
US_Wisconsin	4	0
US_FNAL-FermiGrid	1	0

Jobscript

#!/bin/bash
:<<'EOF'

The following optional environment variables can be set when creating the
workflow/stage: FCL_FILE, NUM_EVENTS, DUNE_VERSION, DUNE_QUALIFIER

EOF

# fcl file and DUNE software version/qualifier to be used
ANA_FILE=QLMatchAna.fcl
NUM_EVENTS=-1
DUNE_VERSION=${DUNE_VERSION:-v09_91_04d01}
DUNE_QUALIFIER=${DUNE_QUALIFIER:-e26:prof}

# number of events to process from the input file
if [ "$NUM_EVENTS" != "" ] ; then
 events_option="-n $NUM_EVENTS"
fi

# First get an unprocessed file from this stage
did_pfn_rse=`$JUSTIN_PATH/justin-get-file`

if [ "$did_pfn_rse" = "" ] ; then
  echo "Nothing to process - exit jobscript"
  exit 0
fi

echo "did_pfn_rse: $did_pfn_rse"

# Keep a record of all input DIDs, for pdjson2meta file -> DID mapping
echo "$did_pfn_rse" | cut -f1 -d' ' >>all-input-dids.txt

# pfn is also needed when creating justin-processed-pfns.txt
pfn=`echo $did_pfn_rse | cut -f2 -d' '`
echo "Input PFN = $pfn"

# Setup DUNE environment
source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh
export PRODUCTS="${INPUT_TAR_DIR_LOCAL}/localProducts_larsoft_v09_91_04_01_e26_prof/:$PRODUCTS" #working
setup dunesw "$DUNE_VERSION" -q "$DUNE_QUALIFIER"

# need this to let lar find the analyzer lib
#export CET_PLUGIN_PATH="${INPUT_TAR_DIR_LOCAL}/build_slf7.x86_64/QLMatching/slf7.x86_64.e26.prof/lib:${INPUT_TAR_DIR_LOCAL}/build_slf7.x86_64/dunereco/slf7.x86_64.e26.prof/lib:$CET_PLUGIN_PATH"
export CET_PLUGIN_PATH="${INPUT_TAR_DIR_LOCAL}/build_slf7.x86_64/QLMatching/slf7.x86_64.e26.prof/lib:$CET_PLUGIN_PATH"
#export LD_LIBRARY_PATH="${INPUT_TAR_DIR_LOCAL}/build_slf7.x86_64/dunereco/slf7.x86_64.e26.prof/lib:${INPUT_TAR_DIR_LOCAL}/build_slf7.x86_64/QLMatching/slf7.x86_64.e26.prof/lib:$LD_LIBRARY_PATH"

# check Symlink
echo "check symbolic links of ${INPUT_TAR_DIR_LOCAL}/build_slf7.x86_64/QLMatching/slf7.x86_64.e26.prof/lib/libQLMatchAna_module.so: "
ldd ${INPUT_TAR_DIR_LOCAL}/build_slf7.x86_64/QLMatching/slf7.x86_64.e26.prof/lib/libQLMatchAna_module.so

echo "Redo the symlink"
ln -sf ${INPUT_TAR_DIR_LOCAL}/build_slf7.x86_64/dunereco/slf7.x86_64.e26.prof/lib/libdune_BlipRecoAlg.so libdune_BlipRecoAlg.so
ln -sf ${INPUT_TAR_DIR_LOCAL}/build_slf7.x86_64/dunereco/slf7.x86_64.e26.prof/lib/libdune_BlipUtils.so libdune_BlipUtils.so

# check link
echo "check redo symbolic links: "
ldd ${INPUT_TAR_DIR_LOCAL}/build_slf7.x86_64/QLMatching/slf7.x86_64.e26.prof/lib/libQLMatchAna_module.so

# It IS IMPORTANT TO PUT ALL CUSTOMIZED FCL FILES IN INPUT_TAR_DIR_LOCAL
export FHICL_FILE_PATH=${INPUT_TAR_DIR_LOCAL}:${FHICL_FILE_PATH}
export FW_SEARCH_PATH=${INPUT_TAR_DIR_LOCAL}/config_data:$FW_SEARCH_PATH
export FW_SEARCH_PATH=${INPUT_TAR_DIR_LOCAL}:$FW_SEARCH_PATH
export OMP_NUM_THREADS=${JUSTIN_PROCESSORS}

# Construct outFile from input $pfn
now=$(date -u +"%Y-%m-%dT_%H%M%SZ")
Ffname=`echo $pfn | awk -F/ '{print $NF}'`
fname=`echo $Ffname | awk -F. '{print $1}'`
outAnaFile=${fname}_QLMatch_ana_${now}
campaign="justIN.w${JUSTIN_WORKFLOW_ID}s${JUSTIN_STAGE_ID}"

(
# Do the scary preload stuff in a subshell!
# be able to read a file from an xroot path
export LD_PRELOAD=${XROOTD_LIB}/libXrdPosixPreload.so
#echo "lar --print-description QLMatchAna"
#lar --print-description QLMatchAna
lar -c $ANA_FILE $events_option -T ${outAnaFile}.root $pfn > ${fname}_myana_${now}.log 2>&1
)

# Subshell exits with exit code of last command
larExit=$?
echo "lar exit code $larExit"
echo "$pfn" > justin-processed-pfns.txt

# Create compressed tar file with all log files
tar zcf `echo "$JUSTIN_JOBSUB_ID.logs.tgz" | sed 's/@/_/g'` *.log
exit $jobscriptExit
#exit $larExit