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Workflow 9853, Stage 1

Workflow9853
Priority50
Processors1
Wall seconds7200
Image/cvmfs/singularity.opensciencegrid.org/fermilab/fnal-wn-sl7:latest
RSS bytes1048576000 (1000 MiB)
Max distance for inputs30.0
Enabled input RSEs CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, MONTECARLO, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled output RSEs CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled sites BR_CBPF, CA_SFU, CERN, CH_UNIBE-LHEP, CZ_FZU, ES_CIEMAT, ES_PIC, FR_CCIN2P3, IT_CNAF, NL_NIKHEF, NL_SURFsara, UK_Bristol, UK_Brunel, UK_Durham, UK_Edinburgh, UK_Lancaster, UK_Liverpool, UK_Manchester, UK_Oxford, UK_QMUL, UK_RAL-PPD, UK_RAL-Tier1, UK_Sheffield, US_Colorado, US_FNAL-FermiGrid, US_FNAL-T1, US_Michigan, US_PuertoRico, US_SU-ITS, US_Swan, US_UChicago, US_UConn-HPC, US_UCSD, US_Wisconsin
Scopeusertests
Events for this stage

Output patterns

 DestinationPatternLifetimeFor next stageRSE expression
1https://fndcadoor.fnal.gov:2880/dune/scratch/users/imawby/kalmanAlg_nu_0/fnal/09853/1*ClusterValidation_WithAlg*.root
2https://fndcadoor.fnal.gov:2880/dune/scratch/users/imawby/kalmanAlg_nu_0/fnal/09853/1*ClusterValidation_WithoutAlg*.root

Environment variables

NameValue
INPUT_TAR_DIR_LOCAL/cvmfs/fifeuser1.opensciencegrid.org/sw/dune/beef6bc52ed92a0194f70629c90d4925370b01ea
NUM_EVENTS100

File states

Total filesFindingUnallocatedAllocatedOutputtingProcessedNot foundFailed
10000000953047

Job states

TotalSubmittedStartedProcessingOutputtingFinishedNotusedAbortedStalledJobscript errorOutputting failedNone processed
66210000146814513047779812
Files processed00100100200200300300400400500500600600Nov-06 13:00Nov-06 18:00Nov-06 23:00Nov-07 04:00Nov-07 09:00Nov-07 14:00Nov-07 19:00Nov-08 00:00Nov-08 05:00Nov-08 10:00Nov-08 15:00Nov-08 20:00Nov-09 01:00Nov-09 06:00Nov-09 11:00Nov-09 16:00Nov-09 21:00Nov-10 02:00Nov-10 07:00Nov-10 12:00Nov-10 17:00Nov-10 22:00Files processedBin start timesNumber per binUK_BristolUS_PuertoRicoUK_DurhamUK_QMULUK_OxfordUK_RAL-Tier1NL_NIKHEFUS_UChicagoES_CIEMATUS_WisconsinUS_UCSDUS_FNAL-FermiG…US_FNAL-FermiGridCA_SFU
Replicas per RSE1000478.91495889807953205.302155864189841000294.0383811204655275.710446316897750318.46951451702074143.94291369570648329.8335185350666136.3297369372531344341.35035764440744130.6477745512538341352.55538445253984126.7419321066604339363.45315065824155124.2955021087191535373.7183019063742123.121362362001864379.16190444480213122.92849200275281379.8603158357401122.92509700062219Replicas per RSEDUNE_US_FNAL_DISK_S…DUNE_US_FNAL_DISK_STAGE (44%)FNAL_DCACHE (44%)PRAGUE (2%)NIKHEF (2%)RAL-PP (1%)SURFSARA (1%)RAL_ECHO (1%)QMUL (1%)DUNE_FR_CCIN2P3_DIS…DUNE_FR_CCIN2P3_DISK (0%)DUNE_ES_PIC (0%)

RSEs used

NameInputsOutputs
DUNE_US_FNAL_DISK_STAGE9940
PRAGUE640
NIKHEF550
SURFSARA520
RAL-PP440
QMUL400
RAL_ECHO390
DUNE_FR_CCIN2P3_DISK40
DUNE_ES_PIC10
None01906

Stats of processed input files as CSV or JSON, and of uploaded output files as CSV or JSON (up to 10000 files included)

File reset events, by site

SiteAllocatedOutputting
US_UChicago4311
US_PuertoRico390
CA_SFU290
US_FNAL-FermiGrid299
US_Wisconsin165
UK_QMUL51
ES_CIEMAT44
UK_RAL-Tier130
UK_RAL-PPD20
ES_PIC20
NL_NIKHEF20
NL_SURFsara20
CERN10
UK_Manchester10
US_UCSD04
UK_Oxford01

Jobscript

#!/bin/bash

# FCL file and DUNE software version/qualifier to be used
FCL_FILE=${FCL_FILE:-$INPUT_TAR_DIR_LOCAL/kalmanAlg.fcl}
DUNE_VERSION=${DUNE_VERSION:-v10_08_00d00}
DUNE_QUALIFIER=${DUNE_QUALIFIER:-e26:prof}

# Make sure that we're not beeing greedy with resources...
if [ -z ${JUSTIN_PROCESSORS} ]; then
 JUSTIN_PROCESSORS=1
fi

echo "Justin processors: ${JUSTIN_PROCESSORS}"

export TF_NUM_THREADS=${JUSTIN_PROCESSORS}
export OPENBLAS_NUM_THREADS=${JUSTIN_PROCESSORS}
export JULIA_NUM_THREADS=${JUSTIN_PROCESSORS}
export MKL_NUM_THREADS=${JUSTIN_PROCESSORS}
export NUMEXPR_NUM_THREADS=${JUSTIN_PROCESSORS}
export OMP_NUM_THREADS=${JUSTIN_PROCESSORS}

# setup the DUNE environment
source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh
source $INPUT_TAR_DIR_LOCAL/setup-grid
setup dunesw "$DUNE_VERSION" -q "$DUNE_QUALIFIER"
mrbslp

export FW_SEARCH_PATH=.:${INPUT_TAR_DIR_LOCAL}:$FW_SEARCH_PATH
export FHICL_FILE_PATH=.:${INPUT_TAR_DIR_LOCAL}:$FHICL_FILE_PATH

# number of events to process from the input file
if [ "$NUM_EVENTS" != "" ] ; then
 events_option="-n $NUM_EVENTS"
fi

# First get an unprocessed file from this stage
did_pfn_rse=`$JUSTIN_PATH/justin-get-file`

if [ "$did_pfn_rse" = "" ] ; then
  echo "Nothing to process - exit jobscript"
  exit 0
fi

# Keep a record of all input DIDs, for pdjson2meta file -> DID mapping
echo "$did_pfn_rse" | cut -f1 -d' ' >>all-input-dids.txt

# pfn is also needed when creating justin-processed-pfns.txt
pfn=`echo $did_pfn_rse | cut -f2 -d' '`
echo "Input PFN = $pfn"

# Construct outFile from input $pfn 
now=$(date -u +"%Y-%m-%dT_%H%M%SZ")
Ffname=`echo $pfn | awk -F/ '{print $NF}'`
fname=`echo $Ffname | awk -F. '{print $1}'`

campaign="justIN.w${JUSTIN_WORKFLOW_ID}s${JUSTIN_STAGE_ID}"

# Here is where the LArSoft command is call it 
(
# Do the scary preload stuff in a subshell!
export LD_PRELOAD=${XROOTD_LIB}/libXrdPosixPreload.so

lar -c $FCL_FILE $events_option "$pfn" > ${fname}_reco_${now}.log 2>&1
)

# Subshell exits with exit code of last command
larExit=$?
echo "lar exit code $larExit"

echo '=== Start last 100 lines of lar log file ==='
tail -100 ${fname}_reco_${now}.log
echo '=== End last 100 lines of lar log file ==='

mv ClusterValidation_WithAlg.root ClusterValidation_WithAlg_${fname}.root
mv ClusterValidation_WithoutAlg.root ClusterValidation_WithoutAlg_${fname}.root

if [ $larExit -eq 0 ] ; then
  # Success !
  echo "$pfn" > justin-processed-pfns.txt
  jobscriptExit=0
else
  # Oh :(
  jobscriptExit=1
fi

# Create compressed tar file with all log files 
tar zcf `echo "$JUSTIN_JOBSUB_ID.logs.tgz" | sed 's/@/_/g'` *.log
exit $jobscriptExit
justIN time: 2026-02-10 11:34:00 UTC       justIN version: 01.06.00