Workflow 9855, Stage 1

Workflow	9855
Priority	50
Processors	1
Wall seconds	14600
Image	/cvmfs/singularity.opensciencegrid.org/fermilab/fnal-wn-sl7:latest
RSS bytes	4194304000 (4000 MiB)
Max distance for inputs	30.0
Enabled input RSEs	CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, MONTECARLO, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled output RSEs	CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled sites	BR_CBPF, CA_SFU, CERN, CH_UNIBE-LHEP, CZ_FZU, ES_CIEMAT, ES_PIC, FR_CCIN2P3, IT_CNAF, NL_NIKHEF, NL_SURFsara, UK_Bristol, UK_Brunel, UK_Durham, UK_Edinburgh, UK_Lancaster, UK_Liverpool, UK_Manchester, UK_Oxford, UK_QMUL, UK_RAL-PPD, UK_RAL-Tier1, UK_Sheffield, US_Colorado, US_FNAL-FermiGrid, US_FNAL-T1, US_Michigan, US_PuertoRico, US_SU-ITS, US_Swan, US_UChicago, US_UConn-HPC, US_UCSD, US_Wisconsin
Scope	usertests
Events for this stage

Output patterns

	Destination	Pattern	Lifetime	For next stage	RSE expression
1	https://fndcadoor.fnal.gov:2880/dune/scratch/users/dmunoz/fnal/09855/1	*.root

Environment variables

Name	Value
fcl_dir	/cvmfs/fifeuser4.opensciencegrid.org/sw/dune/441105b7476dff4b40bea289993f7b86e1e284d9

File states

Total files	Finding	Unallocated	Allocated	Outputting	Processed	Not found	Failed
2	0	1	0	0	1	0	0

Job states

Total	Submitted	Started	Processing	Outputting	Finished	Notused	Aborted	Stalled	Jobscript error	Outputting failed	None processed
22	0	0	0	0	4	11	4	3	0	0	0

RSEs used

Name	Inputs	Outputs
DUNE_ES_PIC	4	0
RAL_ECHO	1	0
None	0	1

Stats of processed input files as CSV or JSON, and of uploaded output files as CSV or JSON (up to 10000 files included)

File reset events, by site

Site	Allocated	Outputting
NL_NIKHEF	2	0
ES_PIC	1	0
FR_CCIN2P3	1	0

Jobscript

#!/bin/bash
:<<'EOF'

To use this jobscript to process 5 files from the dataset fardet-hd__fd_mc_2023a_reco2__full-reconstructed__v09_81_00d02__standard_reco2_dune10kt_nu_1x2x6__prodgenie_nu_dune10kt_1x2x6__out1__validation
data and put the output in the $USER namespace (MetaCat) and saves the output in /scratch
Use this command to create the workflow:

justin simple-workflow \
--mql \
"files from fardet-hd:fardet-hd__fd_mc_2023a__hit-reconstructed__v09_78_01d01__standard_reco1_dune10kt_1x2x6__prodgenie_nu_dune10kt_1x2x6__out1__v1_official limit 1 limit 5  ordered"\
--jobscript submit_ana.jobscript --rss-mb 4000 \
--scope ana --output-pattern '*_myreco2_*.root:$FNALURL/$USERF' 

The following optional environment variables can be set when creating the
workflow/stage: FCL_FILE, NUM_EVENTS, DUNE_VERSION, DUNE_QUALIFIER 

EOF

# fcl file and DUNE software version/qualifier to be used
#FCL_FILE=${FCL_FILE:-$INPUT_TAR_DIR_LOCAL/srcs/protoduneana/protoduneana/singlephase/mucap/muoncapturejob.fcl}



# number of events to process from the input file
if [ "$NUM_EVENTS" != "" ] ; then
 events_option="-n $NUM_EVENTS"
fi

# First get an unprocessed file from this stage
did_pfn_rse=`$JUSTIN_PATH/justin-get-file`

if [ "$did_pfn_rse" = "" ] ; then
  echo "Nothing to process - exit jobscript"
  exit 0
fi

# Keep a record of all input DIDs, for pdjson2meta file -> DID mapping
echo "$did_pfn_rse" | cut -f1 -d' ' >>all-input-dids.txt

# pfn is also needed when creating justin-processed-pfns.txt
pfn=`echo $did_pfn_rse | cut -f2 -d' '`
if [ "$pfn" = "" ] || [ "$pfn" = "000001" ]; then
  echo "No valid input file found. Exiting."
  exit 0
fi

# Setup DUNE environment

DUNE_VERSION=${DUNE_VERSION:-v09_91_03d00}
DUNE_QUALIFIER=${DUNE_QUALIFIER:-e26:prof}

source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh
# export PRODUCTS="${INPUT_TAR_DIR_LOCAL}/localProducts_larsoft_v09_91_03d00_e26_prof/:$PRODUCTS" #working
setup dunesw "$DUNE_VERSION" -q "$DUNE_QUALIFIER"
setup justin
setup metacat

# justin get-token
# mrbslp


FCL_GEN=${FCL_GEN:-$fcl_dir/caloinfo.fcl}   #for changing fcl file for generating
echo "Path to fcl: "
echo $FCL_GEN

#export PRODUCTS="${INPUT_TAR_DIR_LOCAL}/localProducts_larsoft_v09_91_03d00_e26_prof/setup:$PRODUCTS" #not working
#source $INPUT_TAR_DIR_LOCAL/localProducts_larsoft_v09_91_03d00_e26_prof/setup #not working
#setup protoduneana "$DUNE_VERSION" -q "$DUNE_QUALIFIER" # working


# Construct outFile from input $pfn 
now=$(date -u +"%Y-%m-%dT_%H%M%SZ")
Ffname=`echo $pfn | awk -F/ '{print $NF}'`
fname=`echo $Ffname | awk -F. '{print $1}'`
campaign="justIN.w${JUSTIN_WORKFLOW_ID}s${JUSTIN_STAGE_ID}"

outFile_GEN=${fname}_calo_${now}.root

# Here is where the LArSoft command is call it 
(
# Do the scary preload stuff in a subshell!
export LD_PRELOAD=${XROOTD_LIB}/libXrdPosixPreload.so
echo "$LD_PRELOAD"


lar -c $FCL_GEN -n -1 -o $outFile_GEN -s $pfn > ${fname}_calo_${now}.log 2>&1


#lar -c $FCL_FILE $events_option -o $outFile "$pfn" > ${fname}_myreco2_${now}.log 2>&1

#lar -c $FCL_FILE $events_option -T ${outRecoFile}.root -o ${fname}_crpcb_bottom_reco.root $pfn > ${outRecoFile}.log 2>&1
#lar -c $ANA_FILE $events_option -T ${outAnaFile}_hist.root -o ${outAnaFile}.root ${fname}_crpcb_bottom_reco.root > ${fname}_myana_${now}.log 2>&1
)

echo '=== Start last 50 lines of lar log file ==='
tail -50 ${fname}_calo_${now}.log
echo '=== End last 50 lines of lar log file ==='

# Subshell exits with exit code of last command
larExit=$?
echo "lar exit code $larExit"

if [ $larExit -eq 0 ] ; then
  # Success !
  echo "$pfn" > justin-processed-pfns.txt
  jobscriptExit=0
else
  # Oh :(
  jobscriptExit=1
fi

# Create compressed tar file with all log files 
tar zcf `echo "$JUSTIN_JOBSUB_ID.logs.tgz" | sed 's/@/_/g'` *.log
exit $jobscriptExit