Workflow 9880, Stage 1

Workflow	9880
Priority	50
Processors	1
Wall seconds	14600
Image	/cvmfs/singularity.opensciencegrid.org/fermilab/fnal-wn-sl7:latest
RSS bytes	4194304000 (4000 MiB)
Max distance for inputs	30.0
Enabled input RSEs	CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, MONTECARLO, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled output RSEs	CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled sites	BR_CBPF, CA_SFU, CERN, CH_UNIBE-LHEP, CZ_FZU, ES_CIEMAT, ES_PIC, FR_CCIN2P3, IT_CNAF, NL_NIKHEF, NL_SURFsara, UK_Bristol, UK_Brunel, UK_Durham, UK_Edinburgh, UK_Lancaster, UK_Liverpool, UK_Manchester, UK_Oxford, UK_QMUL, UK_RAL-PPD, UK_RAL-Tier1, UK_Sheffield, US_Colorado, US_FNAL-FermiGrid, US_FNAL-T1, US_Michigan, US_PuertoRico, US_SU-ITS, US_Swan, US_UChicago, US_UConn-HPC, US_UCSD, US_Wisconsin
Scope	usertests
Events for this stage

Output patterns

	Destination	Pattern	Lifetime	For next stage	RSE expression
1	https://fndcadoor.fnal.gov:2880/dune/scratch/users/dmunoz/fnal/09880/1	*.root
2	https://fndcadoor.fnal.gov:2880/dune/scratch/users/dmunoz/fnal/09880/1	*.logs.tgz

Environment variables

Name	Value
fcl_dir	/cvmfs/fifeuser4.opensciencegrid.org/sw/dune/441105b7476dff4b40bea289993f7b86e1e284d9

File states

Total files	Finding	Unallocated	Allocated	Outputting	Processed	Not found	Failed
10	0	0	0	0	10	0	0

Job states

Total	Submitted	Started	Processing	Outputting	Finished	Notused	Aborted	Stalled	Jobscript error	Outputting failed	None processed
15	0	0	0	0	14	0	0	1	0	0	0

RSEs used

Name	Inputs	Outputs
DUNE_ES_PIC	3	0
DUNE_UK_GLASGOW	2	0
SURFSARA	2	0
RAL_ECHO	1	0
RAL-PP	1	0
DUNE_CERN_EOS	1	0
None	0	20

Stats of processed input files as CSV or JSON, and of uploaded output files as CSV or JSON (up to 10000 files included)

Jobscript

#!/bin/bash

# number of events to process from the input file
if [ "$NUM_EVENTS" != "" ] ; then
 events_option="-n $NUM_EVENTS"
fi

# First get an unprocessed file from this stage
did_pfn_rse=`$JUSTIN_PATH/justin-get-file`

if [ "$did_pfn_rse" = "" ] ; then
  echo "Nothing to process - exit jobscript"
  exit 0
fi

# Keep a record of all input DIDs, for pdjson2meta file -> DID mapping
echo "$did_pfn_rse" | cut -f1 -d' ' >>all-input-dids.txt

# pfn is also needed when creating justin-processed-pfns.txt
pfn=`echo $did_pfn_rse | cut -f2 -d' '`
if [ "$pfn" = "" ] || [ "$pfn" = "000001" ]; then
  echo "No valid input file found. Exiting."
  exit 0
fi

# Setup DUNE environment

DUNE_VERSION=${DUNE_VERSION:-v09_91_03d00}
DUNE_QUALIFIER=${DUNE_QUALIFIER:-e26:prof}

source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh
# export PRODUCTS="${INPUT_TAR_DIR_LOCAL}/localProducts_larsoft_v09_91_03d00_e26_prof/:$PRODUCTS" #working
#setup protoduneana "$DUNE_VERSION" -q "$DUNE_QUALIFIER" # working
setup dunesw "$DUNE_VERSION" -q "$DUNE_QUALIFIER"
setup justin
setup metacat

# mrbslp

FCL_GEN=${FCL_GEN:-$fcl_dir/caloinfo.fcl}   #for changing fcl file for generating
echo "Path to fcl: "
echo $FCL_GEN

# Construct outFile from input $pfn 
now=$(date -u +"%Y-%m-%dT_%H%M%SZ")
Ffname=`echo $pfn | awk -F/ '{print $NF}'`
fname=`echo $Ffname | awk -F. '{print $1}'`
campaign="justIN.w${JUSTIN_WORKFLOW_ID}s${JUSTIN_STAGE_ID}"

outFile_GEN=${fname}_calo_${now}.root

# Here is where the LArSoft command is call it 
(
# Do the scary preload stuff in a subshell!
export LD_PRELOAD=${XROOTD_LIB}/libXrdPosixPreload.so
echo "$LD_PRELOAD"


lar -c $FCL_GEN -n -1 -o temp.root -s $pfn > ${fname}_calo_${now}.log 2>&1

if [ -f "temp.root" ]; then
    echo "Found temp.root - renaming..."
    mv temp.root "$outFile_GEN"
elif [ -f "caloinfo_output_b.root" ]; then
    echo "Found caloinfo_output_b.root - renaming..."
    mv caloinfo_output_b.root "$outFile_GEN"
else
    echo "No matching root file found!"
fi

# )

echo '=== Start last 50 lines of lar log file ==='
tail -50 ${fname}_calo_${now}.log
echo '=== End last 50 lines of lar log file ==='

# Subshell exits with exit code of last command
larExit=$?
echo "lar exit code $larExit"

if [ $larExit -eq 0 ] ; then
  # Success !
  echo "$pfn" > justin-processed-pfns.txt
  jobscriptExit=0
else
  # Oh :(
  jobscriptExit=1
fi

# Create compressed tar file with all log files 
# tar zcf `echo "$JUSTIN_JOBSUB_ID.logs.tgz" | sed 's/@/_/g'` *.log
tar zcf "$(echo "$JUSTIN_JOBSUB_ID.logs.tgz" | sed 's/@/_/g')" *.log *-pnfs.txt
exit $jobscriptExit

)