Workflow 9889, Stage 1

Workflow	9889
Priority	50
Processors	1
Wall seconds	80000
Image	/cvmfs/singularity.opensciencegrid.org/fermilab/fnal-wn-sl7:latest
RSS bytes	4194304000 (4000 MiB)
Max distance for inputs	30.0
Enabled input RSEs	CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, MONTECARLO, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled output RSEs	CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled sites	BR_CBPF, CA_SFU, CERN, CH_UNIBE-LHEP, CZ_FZU, ES_CIEMAT, ES_PIC, FR_CCIN2P3, IT_CNAF, NL_NIKHEF, NL_SURFsara, UK_Bristol, UK_Brunel, UK_Durham, UK_Edinburgh, UK_Lancaster, UK_Liverpool, UK_Manchester, UK_Oxford, UK_QMUL, UK_RAL-PPD, UK_RAL-Tier1, UK_Sheffield, US_Colorado, US_FNAL-FermiGrid, US_FNAL-T1, US_Michigan, US_PuertoRico, US_SU-ITS, US_Swan, US_UChicago, US_UConn-HPC, US_UCSD, US_Wisconsin
Scope	usertests
Events for this stage

Output patterns

	Destination	Pattern	Lifetime	For next stage	RSE expression
1	Rucio usertests:fardet-hd-reco-ritm2612698_9889-fnal-w9889s1p1	*reco.root	864000	False

Environment variables

Name	Value
INPUT_DIR	/cvmfs/fifeuser4.opensciencegrid.org/sw/dune/b166ed062df641b6187af16af0d45bd3284046df

File states

Total files	Finding	Unallocated	Allocated	Outputting	Processed	Not found	Failed
500	0	0	0	0	500	0	0

Job states

Total	Submitted	Started	Processing	Outputting	Finished	Notused	Aborted	Stalled	Jobscript error	Outputting failed	None processed
2409	0	0	0	0	846	0	0	1563	0	0	0

RSEs used

Name	Inputs	Outputs
DUNE_US_FNAL_DISK_STAGE	462	241
PRAGUE	51	0
DUNE_US_BNL_SDCC	2	206
SURFSARA	1	0
DUNE_UK_MANCHESTER_CEPH	0	20
RAL-PP	0	14
QMUL	0	9
DUNE_ES_PIC	0	3
DUNE_CERN_EOS	0	3
RAL_ECHO	0	2
DUNE_UK_GLASGOW	0	1
DUNE_CA_SFU	0	1

Stats of processed input files as CSV or JSON, and of uploaded output files as CSV or JSON (up to 10000 files included)

File reset events, by site

Site	Allocated	Outputting
US_UChicago	7	0
CA_SFU	4	0
US_Wisconsin	1	0
US_FNAL-FermiGrid	0	4

Jobscript

#!/bin/bash
#
source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh
setup metacat
export METACAT_SERVER_URL=https://metacat.fnal.gov:9443/dune_meta_prod/app
export METACAT_AUTH_SERVER_URL=https://metacat.fnal.gov:8143/auth/dune


#Setup recent lar software suite

#setup dunesw v10_11_00d01 -q e26:prof
setup dunesw v10_12_01d01 -q e26:prof
#echo "printing env"
#env


if [ -z ${JUSTIN_PROCESSORS} ]; then
  JUSTIN_PROCESSORS=1
fi

echo "Justin processors: ${JUSTIN_PROCESSORS}"

export TF_NUM_THREADS=${JUSTIN_PROCESSORS}   
export OPENBLAS_NUM_THREADS=${JUSTIN_PROCESSORS} 
export JULIA_NUM_THREADS=${JUSTIN_PROCESSORS} 
export MKL_NUM_THREADS=${JUSTIN_PROCESSORS} 
export NUMEXPR_NUM_THREADS=${JUSTIN_PROCESSORS} 
export OMP_NUM_THREADS=${JUSTIN_PROCESSORS}  

#
echo "Will use justin-get-file" 

DID_PFN_RSE=`$JUSTIN_PATH/justin-get-file` 

##Check that any file was returned
if [ "${DID_PFN_RSE}" == "" ] ; then
echo "Could not get file"
exit 0
fi

FILE=`echo ${DID_PFN_RSE} | cut -f2 -d' '`
DID=`echo ${DID_PFN_RSE} | cut -f1 -d' '`
echo "DID: ${DID}"

echo  "=====================full string: "
echo ${DID_PFN_RSE}
echo  "====================="
 
 
metacat file show -mj ${DID} > old_md.json
mcExit=$?
if [ $mcExit -eq 0 ] ; then
  echo "old metadata:"
  cat old_md.json
else
  echo "Could not retrieve old metadata"
  exit 1 
fi

now=$(date -u +"%Y%m%dT%H%M%SZ")  
namespace=${JUSTIN_SCOPE:-"usertests"}

echo "===============JUSTIN_JOBSUB_ID"
runid=$JUSTIN_WORKFLOW_ID
CLUSTER=`echo $JUSTIN_JOBSUB_ID | awk '{split($0,a,"."); print a[1]}'`
echo $CLUSTER
 
# reco2
echo "============reco2=========================" 


infile=`echo $DID | awk -F ':' '{print $2}'`
reco="${infile%.root}" 
reco_name=${reco}_${now}_reco

echo "check  output filename "  ${reco_name}.root

lar -c  tpg_dune10kt_1x2x2.fcl $FILE -o ${reco_name}.root -n -1 
larExit=$? 


#echo "Reco step lar exit code $larExit"


if [ $larExit -eq 0 ] ; then 
  echo "Moving on to metadata extractor "
else
  exit $larExit 
fi
 
#OUTFILE=`ls *reco.root`
OUTFILE=${reco_name}.root

mv triggerAnaTree_hist.root triggerAnaTree_${reco_name}_hist.root


echo "============OUTPUT FILE: " $OUTFILE  
 
extractor_prod.py --infile ${OUTFILE}  --no_crc    --appfamily art --appname reco --appversion  v10_12_01d01  --requestid ritm2612698  --input_json ${INPUT_DIR}/trg_input.json> ${OUTFILE}.ext.json  && sed -i -e 's/physics/fardet-hd/g' ${OUTFILE}.ext.json

extractorExit=$?
if [ $extractorExit -eq 0 ] ; then
  # Success !
  echo "Extracted metadata"
else
  # Error -- exit immediately 
  jobscriptExit=1
  echo "Failed to extract md"
  exit $extractorExit
fi

sed -i 's/Reco2/reco2/g'  ${OUTFILE}.ext.json

echo "checking file======" $DID
echo $DID > all-input-dids.txt
python ${INPUT_DIR}/pdjson2metadata ${OUTFILE}.ext.json  all-input-dids.txt usertests > ${OUTFILE}.temp.json 


sed '/DUNE/ s/.*/\L&/'  ${OUTFILE}.temp.json >  ${OUTFILE}.json

idrun=`jq -r '.. | objects | select(has("core.runs")) | .["core.runs"][0]' old_md.json`
idsubrun=`jq -r '.. | objects | select(has("core.runs_subruns")) | .["core.runs_subruns"][0]' old_md.json`

sed -i "s/-99999/$idrun/g" ${OUTFILE}.json
sed -i "s/-88888/$idsubrun/g" ${OUTFILE}.json

# cp ${OUTFILE}.json triggerAnaTree_${reco_name}_hist.root.json
		  
converterExit=$?
if [ $converterExit -eq 0 ] ; then
  # Success !
  echo "MD conversion to MetaCat OK"
  echo "$FILE" > justin-processed-pfns.txt
else 
  jobscriptExit=1
  echo "Failed to convert md to MetacaCat"
  exit $converterExit
fi

 
ls
exit 0