Workflow 12303, Stage 2

Workflow	12303
Campaign	557
Priority	50
Processors	1
Wall seconds	18000
Image	/cvmfs/singularity.opensciencegrid.org/fermilab/fnal-wn-sl7:latest
RSS bytes	4194304000 (4000 MiB)
Max distance for inputs	30.0
Enabled input RSEs	CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, MONTECARLO, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled output RSEs	CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled sites	BR_CBPF, CA_SFU, CA_Victoria, CERN, CH_UNIBE-LHEP, CZ_FZU, ES_CIEMAT, ES_PIC, FR_CCIN2P3, IT_CNAF, NL_NIKHEF, NL_SURFsara, UK_Bristol, UK_Brunel, UK_Durham, UK_Edinburgh, UK_Glasgow, UK_Imperial, UK_Lancaster, UK_Liverpool, UK_Manchester, UK_Oxford, UK_QMUL, UK_RAL-PPD, UK_RAL-Tier1, UK_Sheffield, US_BNL, US_Colorado, US_FNAL-FermiGrid, US_FNAL-T1, US_Michigan, US_NotreDame, US_PuertoRico, US_SU-ITS, US_Swan, US_UChicago, US_UConn-HPC, US_UCSD, US_Wisconsin
Scope	usertests
Events for this stage

Output patterns

	Destination	Pattern	Lifetime	For next stage	RSE expression
1	Rucio usertests:fnal-w12303s2p1	*_offline.root	7776000	False
2	Rucio usertests:fnal-w12303s2p2	*_offline_larcv.root	7776000	False

Environment variables

Name	Value
FHICL_FILE	standard_reco_stage1_protodunevd_offline_hv220.fcl
METADATA_DIR	/cvmfs/fifeuser1.opensciencegrid.org/sw/dune/15312db012789c8d8eb7160dddcf1faebbe4a3af
NEVENTS	-1

File states

Total files	Finding	Unallocated	Allocated	Outputting	Processed	Not found	Failed
10	0	3	0	0	5	0	2

Job states

Total	Submitted	Started	Processing	Outputting	Finished	Notused	Aborted	Stalled	Jobscript error	Outputting failed	None processed
61	0	0	0	0	36	0	0	25	0	0	0

RSEs used

Name	Inputs	Outputs
DUNE_US_FNAL_DISK_STAGE	30	10

Stats of processed input files as CSV or JSON, and of uploaded output files as CSV or JSON (up to 10000 files included)

File reset events, by site

Site	Allocated	Outputting
US_UChicago	11	0
US_FNAL-FermiGrid	6	0
US_BNL	3	0
US_PuertoRico	1	0
CA_SFU	1	0
US_UCSD	1	0

Jobscript

#!/bin/bash
#

source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh
setup metacat
export METACAT_SERVER_URL=https://metacat.fnal.gov:9443/dune_meta_prod/app
export METACAT_AUTH_SERVER_URL=https://metacat.fnal.gov:8143/auth/dune

DUNE_TAG=v10_17_00d00
#Setup recent lar software suite
DUNE_VERSION=${DUNE_VERSION:-${DUNE_TAG}}
setup dunesw \
   "${DUNE_VERSION}" \
   -q "${DUNE_QUALIFIER:-e26:prof}"

if [ $? -ne 0 ]; then
  echo "Failed to setup dunesw $DUNE_VERSION $DUNE_QUALIFIER"
  exit 1
fi

if [ -n "${METADATA_DIR}" ]; then
  stat ${METADATA_DIR}
  if [ $? -ne 0 ]; then
    echo "failed to stat metadata dir"
  fi

  echo "metadata dir contents:"
  ls $METADATA_DIR
  PYTHONPATH=${METADATA_DIR}:$PYTHONPATH
fi

#export WIRECELL_PATH=${WIRECELL_CFG}:$WIRECELL_PATH
export FHICL_FILE_PATH=${METADATA_DIR}:${FHICL_FILE_PATH}
export FW_SEARCH_PATH=${METADATA_DIR}:$FW_SEARCH_PATH 

FCL1=${FCL1:-${FHICL_FILE}}

echo "FCL1 dump:" ${FCL1}
fhicl-dump ${FCL1}
if [ $? -ne 0 ]; then
  echo "fhicl-dump ${FCL1} failed"
  exit 1
fi

echo "DUNESW loc:"
ups active | grep dunesw

if [ -z ${JUSTIN_PROCESSORS} ]; then
  JUSTIN_PROCESSORS=1
fi

echo "Justin processors: ${JUSTIN_PROCESSORS}"

export TF_NUM_THREADS=${JUSTIN_PROCESSORS}   
export OPENBLAS_NUM_THREADS=${JUSTIN_PROCESSORS} 
export JULIA_NUM_THREADS=${JUSTIN_PROCESSORS} 
export MKL_NUM_THREADS=${JUSTIN_PROCESSORS} 
export NUMEXPR_NUM_THREADS=${JUSTIN_PROCESSORS} 
export OMP_NUM_THREADS=${JUSTIN_PROCESSORS}  

echo "printing env"
env

echo "Will use justin-get-file"
#
DID_PFN_RSE=`$JUSTIN_PATH/justin-get-file`
##Check that any file was returned
if [ "${DID_PFN_RSE}" == "" ] ; then
  echo "Could not get file"
  exit 0
fi

pfn=`echo ${DID_PFN_RSE} | cut -f2 -d' '`
did=`echo ${DID_PFN_RSE} | cut -f1 -d' '`
echo "pfn: ${pfn}"
echo "did: ${did}"
now=$(date -u +"%Y%m%dT%H%M%SZ")

#output_file=$(basename ${pfn%.*})_${now}_singlehit.root
#echo "output_file: $output_file"

nevents=${NEVENTS:--1}

extra_line=""
if [ -n "${SKIPFCL2}" ]; then
  jobsub_id=`echo ${JUSTIN_JOBSUB_ID:-1.1@1} | cut -f1 -d'@' | sed -e"s/\./_/"`
fi

echo -n "Running reco "
touch reco.log
starttime=`date +"%s"`.0
if [[ "${FCL1}" == *"stage0"* ]]; then
    echo "stage0"
    LD_PRELOAD=$XROOTD_LIB/libXrdPosixPreload.so lar -c ${FCL1} \
    -n ${nevents} \
    ${pfn} #>reco.log 2>&1
else
    echo "stage1"
    lar -c ${FCL1} \
    -n ${nevents} \
    ${pfn} #>reco.log 2>&
fi
larExit=$?
endtime=`date +"%s"`.0

if [ $larExit -ne 0 ]; then
  echo "Error in reco1"
  cat reco.log
  exit $larExit
fi

if [ -n "${SKIPFCL2}" ]; then
  echo "$pfn" > justin-processed-pfns.txt
  exit 0
fi

#output_stage1_file=`ls *stage1.root`

#starttime=`date +"%s"`.0
#lar -c ${FCL2} \
#    $output_stage1_file #>reco.log 2>&1
#larExit=$?
#endtime=`date +"%s"`.0

if [ $larExit -ne 0 ]; then
  echo "Error in reco2"
  cat reco.log
  exit $larExit
fi

output_reco_file=`ls *_offline.root`

echo "Output files:"
echo "\tReco: ${output_reco_file}"
#echo "\tHists: ${output_mr_file}"

echo "Forming reco metadata"
python -m meta_maker --start_time $starttime --end_time $endtime --file_format "artroot" \
                     --app_family "dunesw" --app_name "reco" --app_version ${DUNE_VERSION} \
                     --data_tier "full-reconstructed" --get_events -p "$did" \
                     --campaign "vd-protodune-det-reco-test" \
                     --fcl $FCL1 \
                     -f "${JUSTIN_SCOPE}:$output_reco_file" -j "${output_reco_file}.json"
if [ $? -ne 0 ]; then
  echo "Error in reco metadata"
  exit 1
fi
echo "Ran successfully"
cat ${output_reco_file}.json

if [[ "${FCL1}" == *"stage1"* ]]; then
  larcv_file=`ls larcv_*.root`
  output_larcv_file=${output_reco_file%.*}_larcv.root
  mv ${larcv_file} ${output_larcv_file}

  echo "\tLArCV: ${output_larcv_file}"

  echo "Forming larcv metadata"
  python -m meta_maker --start_time $starttime --end_time $endtime --file_format "root" \
		       --app_family "dunesw" --app_name "reco" --app_version ${DUNE_VERSION} \
		       --data_tier "root-tuple-virtual" -p "$did" \
		       --campaign "vd-protodune-det-reco-test" \
		       --fcl $FCL1 \
		       -f "${JUSTIN_SCOPE}:$output_larcv_file" -j "${output_larcv_file}.json"
  # --parent_as_json \
  if [ $? -ne 0 ]; then
    echo "Error in larcv metadata"
    exit 1
  fi
  echo "formed"
  cat ${output_larcv_file}.json
fi

#echo "Forming hist metadata"
#python -m meta_maker --start_time $starttime --end_time $endtime --file_format "root" \
#                     --app_family "dunesw" --app_name "reco" --app_version ${DUNE_VERSION} \
#                     --data_tier "root-tuple-virtual" -p "$did" \
#                     --campaign "hd-protodune-sim-reco" \
#                     --fcl $FCL1 \
#                     -f "${JUSTIN_SCOPE}:$output_mr_file" -j "${output_mr_file}.json"
# --parent_as_json \
#if [ $? -ne 0 ]; then
#  echo "Error in hist metadata"
#  exit 1
#fi
#echo "formed"
#cat ${output_mr_file}.json

echo "$pfn" > justin-processed-pfns.txt